miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 3' -57.2 NC_004065.1 + 75646 0.73 0.574817
Target:  5'- gGGGAGGAGGuggaaguggaGGUCGGCgaGGCGGCcGCGg -3'
miRNA:   3'- -CCCUUCUUC----------UCGGCCG--UCGUCGuCGU- -5'
15958 3' -57.2 NC_004065.1 + 189426 0.76 0.416315
Target:  5'- cGGGAAGGuAGcAGuuGGUaaacGGCAGCGGCAu -3'
miRNA:   3'- -CCCUUCU-UC-UCggCCG----UCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 163622 0.75 0.460385
Target:  5'- cGGGuagcuccGGAucGAGCggCGGCGGCGGCGGCAg -3'
miRNA:   3'- -CCCu------UCUu-CUCG--GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 152281 0.74 0.496412
Target:  5'- aGGucGAGGAGCucgcccaguccugCGGCGGCGGCGGUg -3'
miRNA:   3'- cCCuuCUUCUCG-------------GCCGUCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 83268 0.74 0.497353
Target:  5'- gGGGAAGAAGuacucGaCCGGCcucGCGGCGGCc -3'
miRNA:   3'- -CCCUUCUUCu----C-GGCCGu--CGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 77001 0.73 0.525931
Target:  5'- uGGAGGAGGAGgaGGCGGCGuGCuGCGa -3'
miRNA:   3'- cCCUUCUUCUCggCCGUCGU-CGuCGU- -5'
15958 3' -57.2 NC_004065.1 + 109228 0.73 0.535596
Target:  5'- cGGcGAcGGGAGAcGgCGGCGGUAGCGGCGu -3'
miRNA:   3'- -CC-CU-UCUUCU-CgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 154151 0.73 0.535596
Target:  5'- cGGGcGGuGGcGgCGGCGGCGGCGGCGg -3'
miRNA:   3'- -CCCuUCuUCuCgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 72501 0.73 0.545322
Target:  5'- cGGGGAGAAGGuggaaCGGCAGguGguGCu -3'
miRNA:   3'- -CCCUUCUUCUcg---GCCGUCguCguCGu -5'
15958 3' -57.2 NC_004065.1 + 130118 0.76 0.391143
Target:  5'- -cGAAGAAGAcGCCGGCAGCAucaaCGGCGa -3'
miRNA:   3'- ccCUUCUUCU-CGGCCGUCGUc---GUCGU- -5'
15958 3' -57.2 NC_004065.1 + 75773 0.77 0.35684
Target:  5'- gGGGAGGcGGAGgCGGCggucggcgagggggAGCGGCGGCGa -3'
miRNA:   3'- -CCCUUCuUCUCgGCCG--------------UCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 67660 0.77 0.343874
Target:  5'- cGGuGAugucGggGAGCggCGGCGGCGGCGGCGg -3'
miRNA:   3'- -CC-CUu---CuuCUCG--GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 71656 0.84 0.125691
Target:  5'- cGGGAcGAAGGGCCuccucaGCAGCAGCAGCGg -3'
miRNA:   3'- -CCCUuCUUCUCGGc-----CGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 29963 0.81 0.196884
Target:  5'- cGGGGAccGGuGCUGGCGGCGGCGGCGg -3'
miRNA:   3'- -CCCUUcuUCuCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 128404 0.79 0.274558
Target:  5'- uGGggGccGAG-CGGCAGCGGCGGCGg -3'
miRNA:   3'- cCCuuCuuCUCgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 62068 0.79 0.280955
Target:  5'- aGGuGAGGAuucggauucaGGGGCgaCGGCAGCGGCAGCGg -3'
miRNA:   3'- -CC-CUUCU----------UCUCG--GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 128725 0.79 0.283547
Target:  5'- aGGGAGAGGcGGCUGGCcccgaggcagccgucGGCAGCGGCAg -3'
miRNA:   3'- cCCUUCUUC-UCGGCCG---------------UCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 110219 0.78 0.314718
Target:  5'- aGGGAAGAGGGcuucGCCGGCGGCuGCGuCAa -3'
miRNA:   3'- -CCCUUCUUCU----CGGCCGUCGuCGUcGU- -5'
15958 3' -57.2 NC_004065.1 + 223202 0.78 0.321828
Target:  5'- gGGGAuacagaacGGGAGucGUCGGCGGUAGCGGCGa -3'
miRNA:   3'- -CCCU--------UCUUCu-CGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 166137 0.77 0.329058
Target:  5'- cGGcaGAGAcgucGGcGCCGGCGGCAGCGGCGc -3'
miRNA:   3'- cCC--UUCU----UCuCGGCCGUCGUCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.