Results 1 - 20 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15958 | 3' | -57.2 | NC_004065.1 | + | 143323 | 0.89 | 0.062377 |
Target: 5'- gGGGAAGAGGGGgCGGgGGCGGCGGCAg -3' miRNA: 3'- -CCCUUCUUCUCgGCCgUCGUCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 99655 | 0.72 | 0.604661 |
Target: 5'- -aGAuGGAGaAGCCGGCGGC-GCGGCGc -3' miRNA: 3'- ccCUuCUUC-UCGGCCGUCGuCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 178019 | 0.72 | 0.624666 |
Target: 5'- cGGGAcaucAGGAGAGaUUGuCAGCAGCAGCu -3' miRNA: 3'- -CCCU----UCUUCUC-GGCcGUCGUCGUCGu -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 127475 | 0.66 | 0.920661 |
Target: 5'- cGGGGAGGuggucGGGCgCGGCGGgAGCguuguccAGCu -3' miRNA: 3'- -CCCUUCUu----CUCG-GCCGUCgUCG-------UCGu -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 223885 | 0.81 | 0.21173 |
Target: 5'- -cGGAGAugacgaguaGGAGCUGGCGGCGGCGGCGu -3' miRNA: 3'- ccCUUCU---------UCUCGGCCGUCGUCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 136232 | 0.8 | 0.227528 |
Target: 5'- cGGGGAGAGGAGCCGGaCAGgaacCGGgAGCGg -3' miRNA: 3'- -CCCUUCUUCUCGGCC-GUC----GUCgUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 132924 | 0.78 | 0.314718 |
Target: 5'- aGGAGGAGGAGaCCGucgcggagaCAGCAGCAGCAc -3' miRNA: 3'- cCCUUCUUCUC-GGCc--------GUCGUCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 80784 | 0.77 | 0.343874 |
Target: 5'- aGGGAgcAGgcGAcGgCGGCGGCGGCGGCGg -3' miRNA: 3'- -CCCU--UCuuCU-CgGCCGUCGUCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 65323 | 0.75 | 0.460385 |
Target: 5'- uGGGAccGGcGGcGgCGGCGGCAGCAGCu -3' miRNA: 3'- -CCCU--UCuUCuCgGCCGUCGUCGUCGu -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 171944 | 0.73 | 0.574817 |
Target: 5'- aGGGucucgcgcAAGgcGGGCggUGGCGGCGGCGGCGg -3' miRNA: 3'- -CCC--------UUCuuCUCG--GCCGUCGUCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 205599 | 0.73 | 0.525931 |
Target: 5'- -cGAGGucuacGUCGGCAGCAGCGGCAa -3' miRNA: 3'- ccCUUCuucu-CGGCCGUCGUCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 184798 | 0.76 | 0.419746 |
Target: 5'- cGGAGGAGGAcggugacgcaacgguGgCGGUGGCGGCAGCGg -3' miRNA: 3'- cCCUUCUUCU---------------CgGCCGUCGUCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 156330 | 0.88 | 0.076956 |
Target: 5'- cGGAGGAGGAGgaagCGGCGGCAGCAGCAa -3' miRNA: 3'- cCCUUCUUCUCg---GCCGUCGUCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 139864 | 0.73 | 0.545322 |
Target: 5'- cGGAGGcggcGGAGCCGGCGGCAGgaCGGaCGa -3' miRNA: 3'- cCCUUCu---UCUCGGCCGUCGUC--GUC-GU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 156284 | 0.83 | 0.157694 |
Target: 5'- cGGGAGGcGGGAGUagCGGCGGCAGCAGUg -3' miRNA: 3'- -CCCUUC-UUCUCG--GCCGUCGUCGUCGu -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 172089 | 0.77 | 0.35146 |
Target: 5'- uGGGuGGAGGGGCCGGgGGaGGCGGCu -3' miRNA: 3'- -CCCuUCUUCUCGGCCgUCgUCGUCGu -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 116309 | 0.73 | 0.564938 |
Target: 5'- -cGAGGugucGGcGUCGGCGGCGGCAGCGg -3' miRNA: 3'- ccCUUCu---UCuCGGCCGUCGUCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 143248 | 0.72 | 0.624666 |
Target: 5'- cGGGggGuGGGAGauggacccgCGGCGGgGGCGGCAg -3' miRNA: 3'- -CCCuuC-UUCUCg--------GCCGUCgUCGUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 93338 | 0.81 | 0.196884 |
Target: 5'- cGGGAAGgcGAGCCGaucGCAGCAGgCGGUAa -3' miRNA: 3'- -CCCUUCuuCUCGGC---CGUCGUC-GUCGU- -5' |
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15958 | 3' | -57.2 | NC_004065.1 | + | 101517 | 0.8 | 0.236355 |
Target: 5'- cGGAGGcaucgucgucgguGGAGgCGGCAGCAGCAGCGg -3' miRNA: 3'- cCCUUCu------------UCUCgGCCGUCGUCGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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