miRNA display CGI


Results 1 - 20 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 5' -55 NC_004065.1 + 146598 0.65 0.9821
Target:  5'- gGGUGGcCAUCGgggcCGUCGGCggggCCgUGUCu -3'
miRNA:   3'- -CCGCC-GUAGCa---GCAGCUGa---GGaGUAG- -5'
15958 5' -55 NC_004065.1 + 174660 0.65 0.9821
Target:  5'- aGGacuGGgGUCGUCGcCGGgaCCUCGUUc -3'
miRNA:   3'- -CCg--CCgUAGCAGCaGCUgaGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 115080 0.65 0.9821
Target:  5'- cGCGGCcUCG--GUCGGCUCUUCu-- -3'
miRNA:   3'- cCGCCGuAGCagCAGCUGAGGAGuag -5'
15958 5' -55 NC_004065.1 + 150924 0.65 0.9821
Target:  5'- cGGCGGCuccggcggguuGUCGagGUaCGACaacaUCUUCGUCc -3'
miRNA:   3'- -CCGCCG-----------UAGCagCA-GCUG----AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 118229 0.65 0.9821
Target:  5'- cGGCGGuCAUCGgagcCGUCGACggaCgCGUg -3'
miRNA:   3'- -CCGCC-GUAGCa---GCAGCUGag-GaGUAg -5'
15958 5' -55 NC_004065.1 + 27286 0.65 0.981905
Target:  5'- cGGCGGCGcCGcCGaCGACgcgucuaUCgUCGUCg -3'
miRNA:   3'- -CCGCCGUaGCaGCaGCUG-------AGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 223741 0.66 0.980076
Target:  5'- -cCGGCGaCGaccgaguacuUCGUCGGCUCCcucUCGUCc -3'
miRNA:   3'- ccGCCGUaGC----------AGCAGCUGAGG---AGUAG- -5'
15958 5' -55 NC_004065.1 + 97172 0.66 0.980076
Target:  5'- gGGCGGguUCcacuUCGg-GGCUCgUCGUCg -3'
miRNA:   3'- -CCGCCguAGc---AGCagCUGAGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 151490 0.66 0.980076
Target:  5'- aGCGGCA-CG-CGgacgGGCUCCUCAg- -3'
miRNA:   3'- cCGCCGUaGCaGCag--CUGAGGAGUag -5'
15958 5' -55 NC_004065.1 + 3398 0.66 0.980076
Target:  5'- uGUGGCA-CGgu-UCGGCUCCUCGgaUCa -3'
miRNA:   3'- cCGCCGUaGCagcAGCUGAGGAGU--AG- -5'
15958 5' -55 NC_004065.1 + 202750 0.66 0.980076
Target:  5'- cGGCGGCGcCGcCGgu--CUCUUCGUCc -3'
miRNA:   3'- -CCGCCGUaGCaGCagcuGAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 96188 0.66 0.978782
Target:  5'- aGCGGCugguccgucUCGUCGUagaaguccgugucgGACUCCUCuUCu -3'
miRNA:   3'- cCGCCGu--------AGCAGCAg-------------CUGAGGAGuAG- -5'
15958 5' -55 NC_004065.1 + 146765 0.66 0.977886
Target:  5'- cGGCGGCGUC--UGcCGcauCUCCaUCGUCg -3'
miRNA:   3'- -CCGCCGUAGcaGCaGCu--GAGG-AGUAG- -5'
15958 5' -55 NC_004065.1 + 202897 0.66 0.977886
Target:  5'- -cCGGC-UCGUCGUUGucaUCgUCGUCa -3'
miRNA:   3'- ccGCCGuAGCAGCAGCug-AGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 27209 0.66 0.977886
Target:  5'- uGGCGGCgGUCGUgGUCGGCagCgUGUUg -3'
miRNA:   3'- -CCGCCG-UAGCAgCAGCUGagGaGUAG- -5'
15958 5' -55 NC_004065.1 + 75334 0.66 0.977886
Target:  5'- cGCGGCGUcCGUCG-CGuucgUCCUCGa- -3'
miRNA:   3'- cCGCCGUA-GCAGCaGCug--AGGAGUag -5'
15958 5' -55 NC_004065.1 + 43391 0.66 0.977428
Target:  5'- cGGCGGCccgaccacccguucgAUCGUcaccauccuccucacCaUCGACacUCCUCAUCg -3'
miRNA:   3'- -CCGCCG---------------UAGCA---------------GcAGCUG--AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 118349 0.66 0.975524
Target:  5'- -aUGGCGUCGgCGUCGGCgUCUggAUCg -3'
miRNA:   3'- ccGCCGUAGCaGCAGCUG-AGGagUAG- -5'
15958 5' -55 NC_004065.1 + 118522 0.66 0.975524
Target:  5'- gGGUucGGCAUCuUCGUUcgagGACUCguuCUCAUCg -3'
miRNA:   3'- -CCG--CCGUAGcAGCAG----CUGAG---GAGUAG- -5'
15958 5' -55 NC_004065.1 + 102446 0.66 0.975523
Target:  5'- aGGCgcacuuGGCGagguaGUCGUCGACgUCCcacUCGUCg -3'
miRNA:   3'- -CCG------CCGUag---CAGCAGCUG-AGG---AGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.