miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 5' -55 NC_004065.1 + 174660 0.65 0.9821
Target:  5'- aGGacuGGgGUCGUCGcCGGgaCCUCGUUc -3'
miRNA:   3'- -CCg--CCgUAGCAGCaGCUgaGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 150924 0.65 0.9821
Target:  5'- cGGCGGCuccggcggguuGUCGagGUaCGACaacaUCUUCGUCc -3'
miRNA:   3'- -CCGCCG-----------UAGCagCA-GCUG----AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 27286 0.65 0.981905
Target:  5'- cGGCGGCGcCGcCGaCGACgcgucuaUCgUCGUCg -3'
miRNA:   3'- -CCGCCGUaGCaGCaGCUG-------AGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 115080 0.65 0.9821
Target:  5'- cGCGGCcUCG--GUCGGCUCUUCu-- -3'
miRNA:   3'- cCGCCGuAGCagCAGCUGAGGAGuag -5'
15958 5' -55 NC_004065.1 + 118229 0.65 0.9821
Target:  5'- cGGCGGuCAUCGgagcCGUCGACggaCgCGUg -3'
miRNA:   3'- -CCGCC-GUAGCa---GCAGCUGag-GaGUAg -5'
15958 5' -55 NC_004065.1 + 146598 0.65 0.9821
Target:  5'- gGGUGGcCAUCGgggcCGUCGGCggggCCgUGUCu -3'
miRNA:   3'- -CCGCC-GUAGCa---GCAGCUGa---GGaGUAG- -5'
15958 5' -55 NC_004065.1 + 211357 0.66 0.970254
Target:  5'- aGGCGGacUCGUgCGUCGAucacaccacauuCUCCUCcgUa -3'
miRNA:   3'- -CCGCCguAGCA-GCAGCU------------GAGGAGuaG- -5'
15958 5' -55 NC_004065.1 + 172181 0.66 0.97402
Target:  5'- gGGCGaacCGUCGUCgGUCGuCUCCggagggacgcugaucUCGUCg -3'
miRNA:   3'- -CCGCc--GUAGCAG-CAGCuGAGG---------------AGUAG- -5'
15958 5' -55 NC_004065.1 + 171976 0.66 0.970254
Target:  5'- cGGCGGCggagggGUCGUCGUgaaCGACgac-CAUCa -3'
miRNA:   3'- -CCGCCG------UAGCAGCA---GCUGaggaGUAG- -5'
15958 5' -55 NC_004065.1 + 32799 0.66 0.972982
Target:  5'- --gGGCcUCGUUGUCGuCgUCCUCGUa -3'
miRNA:   3'- ccgCCGuAGCAGCAGCuG-AGGAGUAg -5'
15958 5' -55 NC_004065.1 + 223741 0.66 0.980076
Target:  5'- -cCGGCGaCGaccgaguacuUCGUCGGCUCCcucUCGUCc -3'
miRNA:   3'- ccGCCGUaGC----------AGCAGCUGAGG---AGUAG- -5'
15958 5' -55 NC_004065.1 + 146765 0.66 0.977886
Target:  5'- cGGCGGCGUC--UGcCGcauCUCCaUCGUCg -3'
miRNA:   3'- -CCGCCGUAGcaGCaGCu--GAGG-AGUAG- -5'
15958 5' -55 NC_004065.1 + 75334 0.66 0.977886
Target:  5'- cGCGGCGUcCGUCG-CGuucgUCCUCGa- -3'
miRNA:   3'- cCGCCGUA-GCAGCaGCug--AGGAGUag -5'
15958 5' -55 NC_004065.1 + 111724 0.66 0.975277
Target:  5'- aGgGGCAUCGcCGUCGcCUUCgccugcgacguggUCGUCa -3'
miRNA:   3'- cCgCCGUAGCaGCAGCuGAGG-------------AGUAG- -5'
15958 5' -55 NC_004065.1 + 97172 0.66 0.980076
Target:  5'- gGGCGGguUCcacuUCGg-GGCUCgUCGUCg -3'
miRNA:   3'- -CCGCCguAGc---AGCagCUGAGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 19572 0.66 0.970254
Target:  5'- cGGUGGCggCGguagCGUCGGCUgCgaaaaAUCg -3'
miRNA:   3'- -CCGCCGuaGCa---GCAGCUGAgGag---UAG- -5'
15958 5' -55 NC_004065.1 + 118522 0.66 0.975524
Target:  5'- gGGUucGGCAUCuUCGUUcgagGACUCguuCUCAUCg -3'
miRNA:   3'- -CCG--CCGUAGcAGCAG----CUGAG---GAGUAG- -5'
15958 5' -55 NC_004065.1 + 43391 0.66 0.977428
Target:  5'- cGGCGGCccgaccacccguucgAUCGUcaccauccuccucacCaUCGACacUCCUCAUCg -3'
miRNA:   3'- -CCGCCG---------------UAGCA---------------GcAGCUG--AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 96188 0.66 0.978782
Target:  5'- aGCGGCugguccgucUCGUCGUagaaguccgugucgGACUCCUCuUCu -3'
miRNA:   3'- cCGCCGu--------AGCAGCAg-------------CUGAGGAGuAG- -5'
15958 5' -55 NC_004065.1 + 57410 0.66 0.969399
Target:  5'- cGGCGGCAUauaacacagacguaCGUCGaUCGGCguuuucgCUUCuUCg -3'
miRNA:   3'- -CCGCCGUA--------------GCAGC-AGCUGa------GGAGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.