miRNA display CGI


Results 1 - 20 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 5' -55 NC_004065.1 + 27402 1.13 0.003597
Target:  5'- cGGCGGCAUCGUCGUCGACUCCUCAUCg -3'
miRNA:   3'- -CCGCCGUAGCAGCAGCUGAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 133462 0.82 0.301121
Target:  5'- cGCGGC-UCGUCGgcggacgaguccagCGACUCCUCGUCc -3'
miRNA:   3'- cCGCCGuAGCAGCa-------------GCUGAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 157026 0.79 0.420662
Target:  5'- uGGCGGCAUCGUCGcccUCG--UCCUCGUg -3'
miRNA:   3'- -CCGCCGUAGCAGC---AGCugAGGAGUAg -5'
15958 5' -55 NC_004065.1 + 210878 0.78 0.492082
Target:  5'- cGGCaGCAUCGUCGUCGucCUCggCAUCu -3'
miRNA:   3'- -CCGcCGUAGCAGCAGCu-GAGgaGUAG- -5'
15958 5' -55 NC_004065.1 + 200755 0.76 0.549109
Target:  5'- aGGCGGCucacgCGUCgGUCG-CUCuCUCGUCg -3'
miRNA:   3'- -CCGCCGua---GCAG-CAGCuGAG-GAGUAG- -5'
15958 5' -55 NC_004065.1 + 142010 0.75 0.598128
Target:  5'- cGGCGG-AUCGUCGaCGACgUCgUCGUCg -3'
miRNA:   3'- -CCGCCgUAGCAGCaGCUG-AGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 89867 0.75 0.617943
Target:  5'- -cUGGUAUCGUUGUCGACggcgCCaUCGUCg -3'
miRNA:   3'- ccGCCGUAGCAGCAGCUGa---GG-AGUAG- -5'
15958 5' -55 NC_004065.1 + 83966 0.75 0.617943
Target:  5'- aGCGGCAcUCGUCcUCGGCaUCCUCgGUCg -3'
miRNA:   3'- cCGCCGU-AGCAGcAGCUG-AGGAG-UAG- -5'
15958 5' -55 NC_004065.1 + 117987 0.74 0.677399
Target:  5'- cGGUGGgGaucUUGUCGUCGuCgUCCUCGUCg -3'
miRNA:   3'- -CCGCCgU---AGCAGCAGCuG-AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 130547 0.73 0.754392
Target:  5'- cGGCGGCAUC-UCGcaCGuCUCCUgGUCc -3'
miRNA:   3'- -CCGCCGUAGcAGCa-GCuGAGGAgUAG- -5'
15958 5' -55 NC_004065.1 + 118440 0.72 0.763647
Target:  5'- cGGCGGCGUCcUCGUC--UUCCUCGg- -3'
miRNA:   3'- -CCGCCGUAGcAGCAGcuGAGGAGUag -5'
15958 5' -55 NC_004065.1 + 75125 0.72 0.763647
Target:  5'- cGGCGGCuUCGaucgcgcgaUCGUCGAC-CC-CGUCu -3'
miRNA:   3'- -CCGCCGuAGC---------AGCAGCUGaGGaGUAG- -5'
15958 5' -55 NC_004065.1 + 8036 0.72 0.763647
Target:  5'- cGCGGUAUCGUCuUCGGgUCCcgaCGUCg -3'
miRNA:   3'- cCGCCGUAGCAGcAGCUgAGGa--GUAG- -5'
15958 5' -55 NC_004065.1 + 99257 0.72 0.771884
Target:  5'- uGCaGGUucucgacGUCGUCGUCGuccucCUCCUCGUCc -3'
miRNA:   3'- cCG-CCG-------UAGCAGCAGCu----GAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 6749 0.72 0.799489
Target:  5'- cGGCGGCAcUCGg-GUCGG-UCCUCGUg -3'
miRNA:   3'- -CCGCCGU-AGCagCAGCUgAGGAGUAg -5'
15958 5' -55 NC_004065.1 + 150230 0.71 0.816587
Target:  5'- aGCGGCGUCGUCaGgaucagCcGCUCCUCcUCg -3'
miRNA:   3'- cCGCCGUAGCAG-Ca-----GcUGAGGAGuAG- -5'
15958 5' -55 NC_004065.1 + 171422 0.71 0.824903
Target:  5'- cGCGcGCGUCGaUC-UCGACUCCgccgUCGUCg -3'
miRNA:   3'- cCGC-CGUAGC-AGcAGCUGAGG----AGUAG- -5'
15958 5' -55 NC_004065.1 + 47861 0.71 0.824903
Target:  5'- uGGCGGCGUCGUagugggagaagaCGUCGGCcacgaagcCCUCGc- -3'
miRNA:   3'- -CCGCCGUAGCA------------GCAGCUGa-------GGAGUag -5'
15958 5' -55 NC_004065.1 + 96775 0.71 0.833054
Target:  5'- aGGCGGCAUCGcggccgucuUCGaCGACUCUUgGa- -3'
miRNA:   3'- -CCGCCGUAGC---------AGCaGCUGAGGAgUag -5'
15958 5' -55 NC_004065.1 + 25553 0.7 0.85645
Target:  5'- -aCGGCGUCGgCGUCGGCcccgcgCCUgAUCa -3'
miRNA:   3'- ccGCCGUAGCaGCAGCUGa-----GGAgUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.