Results 21 - 40 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15958 | 5' | -55 | NC_004065.1 | + | 199179 | 0.7 | 0.884948 |
Target: 5'- --aGGCugGUCGUCGUCGGCU--UCGUCg -3' miRNA: 3'- ccgCCG--UAGCAGCAGCUGAggAGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 59593 | 0.7 | 0.884948 |
Target: 5'- cGGCGGCGUCcuUCGUCGA-UCCgCcgCa -3' miRNA: 3'- -CCGCCGUAGc-AGCAGCUgAGGaGuaG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 190772 | 0.7 | 0.884948 |
Target: 5'- uGGCGGCcugguaaaaaaAUCGUCGUCGuCUCaCUgAa- -3' miRNA: 3'- -CCGCCG-----------UAGCAGCAGCuGAG-GAgUag -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 161887 | 0.7 | 0.884948 |
Target: 5'- cGGCGGCcugaccgaCGcUCGUCGACcggUCaCUCGUCu -3' miRNA: 3'- -CCGCCGua------GC-AGCAGCUG---AG-GAGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 18499 | 0.7 | 0.884948 |
Target: 5'- cGgGGCGUCGUCGccacCGACgacCCUCAg- -3' miRNA: 3'- cCgCCGUAGCAGCa---GCUGa--GGAGUag -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 88038 | 0.7 | 0.890906 |
Target: 5'- cGCGGUAUCGUCGucaucgccgUCGcCUCCggagggaggaccgUCGUCg -3' miRNA: 3'- cCGCCGUAGCAGC---------AGCuGAGG-------------AGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 106441 | 0.7 | 0.891558 |
Target: 5'- cGCgGGCGcUCGUCGUCGAUgCUgggCGUCg -3' miRNA: 3'- cCG-CCGU-AGCAGCAGCUGaGGa--GUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 132221 | 0.7 | 0.891558 |
Target: 5'- cGCGGCucUCGUCGgugaucagcacCGuCUCCUCGUUg -3' miRNA: 3'- cCGCCGu-AGCAGCa----------GCuGAGGAGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 21764 | 0.69 | 0.89542 |
Target: 5'- aGCGGUuccaccugaccgCGUucCGUCGGCUCCUCgGUCa -3' miRNA: 3'- cCGCCGua----------GCA--GCAGCUGAGGAG-UAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 122826 | 0.69 | 0.897952 |
Target: 5'- gGGacgaGGUAUCaGUCGaCGGCUCC-CGUCu -3' miRNA: 3'- -CCg---CCGUAG-CAGCaGCUGAGGaGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 99727 | 0.69 | 0.897952 |
Target: 5'- aGGCGGUuccccucUCGUCGUC--CUCCUCGc- -3' miRNA: 3'- -CCGCCGu------AGCAGCAGcuGAGGAGUag -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 172390 | 0.69 | 0.90413 |
Target: 5'- uGGCGGagAUCGUauaacUCGACUCCUUGUg -3' miRNA: 3'- -CCGCCg-UAGCAgc---AGCUGAGGAGUAg -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 38564 | 0.69 | 0.907731 |
Target: 5'- uGGUGGUgccgcaccucggCGUCGagGACUCCUCgGUCg -3' miRNA: 3'- -CCGCCGua----------GCAGCagCUGAGGAG-UAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 149063 | 0.69 | 0.910087 |
Target: 5'- cGGCGGCAggccgaucggggUCGUCGUC-ACga-UCGUCu -3' miRNA: 3'- -CCGCCGU------------AGCAGCAGcUGaggAGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 118043 | 0.69 | 0.915822 |
Target: 5'- aGGCGGCccugcUCGUCGUacACgUCUUCGUCc -3' miRNA: 3'- -CCGCCGu----AGCAGCAgcUG-AGGAGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 22919 | 0.69 | 0.918053 |
Target: 5'- uGGCGGCGgucggcgguuccgucUCGUCGUCaGAUugucgCCggCAUCg -3' miRNA: 3'- -CCGCCGU---------------AGCAGCAG-CUGa----GGa-GUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 31301 | 0.69 | 0.919155 |
Target: 5'- cGGCGGCGUCGUCGUUcacauguggGACagagccagggccgCCUUAa- -3' miRNA: 3'- -CCGCCGUAGCAGCAG---------CUGa------------GGAGUag -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 47654 | 0.69 | 0.923474 |
Target: 5'- uGGUGGUcaggcuggugucgcaGUCGUCGUCGgaaUCgUCGUCc -3' miRNA: 3'- -CCGCCG---------------UAGCAGCAGCug-AGgAGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 42332 | 0.68 | 0.926619 |
Target: 5'- cGCuGGCcuUCGU-GUCGAC-CCUCAUCc -3' miRNA: 3'- cCG-CCGu-AGCAgCAGCUGaGGAGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 102457 | 0.68 | 0.93168 |
Target: 5'- cGGCGuGcCGUCGUCGUCuuCUuCCUCcUCc -3' miRNA: 3'- -CCGC-C-GUAGCAGCAGcuGA-GGAGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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