miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 5' -55 NC_004065.1 + 102446 0.66 0.975523
Target:  5'- aGGCgcacuuGGCGagguaGUCGUCGACgUCCcacUCGUCg -3'
miRNA:   3'- -CCG------CCGUag---CAGCAGCUG-AGG---AGUAG- -5'
15958 5' -55 NC_004065.1 + 111724 0.66 0.975277
Target:  5'- aGgGGCAUCGcCGUCGcCUUCgccugcgacguggUCGUCa -3'
miRNA:   3'- cCgCCGUAGCaGCAGCuGAGG-------------AGUAG- -5'
15958 5' -55 NC_004065.1 + 172181 0.66 0.97402
Target:  5'- gGGCGaacCGUCGUCgGUCGuCUCCggagggacgcugaucUCGUCg -3'
miRNA:   3'- -CCGCc--GUAGCAG-CAGCuGAGG---------------AGUAG- -5'
15958 5' -55 NC_004065.1 + 105567 0.66 0.972982
Target:  5'- aGCGGCAcggcgCGcCGUCGGCgggCUUCgaGUCg -3'
miRNA:   3'- cCGCCGUa----GCaGCAGCUGa--GGAG--UAG- -5'
15958 5' -55 NC_004065.1 + 32799 0.66 0.972982
Target:  5'- --gGGCcUCGUUGUCGuCgUCCUCGUa -3'
miRNA:   3'- ccgCCGuAGCAGCAGCuG-AGGAGUAg -5'
15958 5' -55 NC_004065.1 + 171976 0.66 0.970254
Target:  5'- cGGCGGCggagggGUCGUCGUgaaCGACgac-CAUCa -3'
miRNA:   3'- -CCGCCG------UAGCAGCA---GCUGaggaGUAG- -5'
15958 5' -55 NC_004065.1 + 211357 0.66 0.970254
Target:  5'- aGGCGGacUCGUgCGUCGAucacaccacauuCUCCUCcgUa -3'
miRNA:   3'- -CCGCCguAGCA-GCAGCU------------GAGGAGuaG- -5'
15958 5' -55 NC_004065.1 + 41117 0.66 0.970254
Target:  5'- cGGCaGGUGUCcggGUCGUCGggccgugaGCUUCUCGUg -3'
miRNA:   3'- -CCG-CCGUAG---CAGCAGC--------UGAGGAGUAg -5'
15958 5' -55 NC_004065.1 + 19572 0.66 0.970254
Target:  5'- cGGUGGCggCGguagCGUCGGCUgCgaaaaAUCg -3'
miRNA:   3'- -CCGCCGuaGCa---GCAGCUGAgGag---UAG- -5'
15958 5' -55 NC_004065.1 + 211479 0.66 0.970254
Target:  5'- cGGagaGGuCGUCGgCGUCGAgUCCgaacCGUCg -3'
miRNA:   3'- -CCg--CC-GUAGCaGCAGCUgAGGa---GUAG- -5'
15958 5' -55 NC_004065.1 + 57410 0.66 0.969399
Target:  5'- cGGCGGCAUauaacacagacguaCGUCGaUCGGCguuuucgCUUCuUCg -3'
miRNA:   3'- -CCGCCGUA--------------GCAGC-AGCUGa------GGAGuAG- -5'
15958 5' -55 NC_004065.1 + 118208 0.67 0.967335
Target:  5'- cGCGGCugacgcauucCGUCGUCGuCuUCUUCAUUg -3'
miRNA:   3'- cCGCCGua--------GCAGCAGCuG-AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 151788 0.67 0.967335
Target:  5'- cGCGGCAUgGaCGUCcuCUCCgcgcUCAUCa -3'
miRNA:   3'- cCGCCGUAgCaGCAGcuGAGG----AGUAG- -5'
15958 5' -55 NC_004065.1 + 111371 0.67 0.967335
Target:  5'- aGGacgaGGCGUCGUCGUcCGACgCCg---- -3'
miRNA:   3'- -CCg---CCGUAGCAGCA-GCUGaGGaguag -5'
15958 5' -55 NC_004065.1 + 206021 0.67 0.967335
Target:  5'- uGGUucagGGCGUC-UCGUCG-CUCUgucUCAUCg -3'
miRNA:   3'- -CCG----CCGUAGcAGCAGCuGAGG---AGUAG- -5'
15958 5' -55 NC_004065.1 + 169563 0.67 0.967335
Target:  5'- cGCGGCAgUCGagagcucCGUCGACguggUCCUCgGUCu -3'
miRNA:   3'- cCGCCGU-AGCa------GCAGCUG----AGGAG-UAG- -5'
15958 5' -55 NC_004065.1 + 158082 0.67 0.967335
Target:  5'- cGGCGGCGUCGcCucCGACcaggCCaccgUCAUCa -3'
miRNA:   3'- -CCGCCGUAGCaGcaGCUGa---GG----AGUAG- -5'
15958 5' -55 NC_004065.1 + 197575 0.67 0.967335
Target:  5'- cGGCGGCA-CG-CGUacacCUCCUcCAUCg -3'
miRNA:   3'- -CCGCCGUaGCaGCAgcu-GAGGA-GUAG- -5'
15958 5' -55 NC_004065.1 + 184646 0.67 0.967033
Target:  5'- uGGUGGUgaaacgcGUCGagaUCGUCGACga-UCAUCa -3'
miRNA:   3'- -CCGCCG-------UAGC---AGCAGCUGaggAGUAG- -5'
15958 5' -55 NC_004065.1 + 169494 0.67 0.964219
Target:  5'- cGGCGGCu---UCGUCGGCUguacCCcCAUCc -3'
miRNA:   3'- -CCGCCGuagcAGCAGCUGA----GGaGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.