miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 5' -55 NC_004065.1 + 169494 0.67 0.964219
Target:  5'- cGGCGGCu---UCGUCGGCUguacCCcCAUCc -3'
miRNA:   3'- -CCGCCGuagcAGCAGCUGA----GGaGUAG- -5'
15958 5' -55 NC_004065.1 + 77111 0.67 0.960901
Target:  5'- cGGCGGCAgCGcCGcCGACa--UCGUCa -3'
miRNA:   3'- -CCGCCGUaGCaGCaGCUGaggAGUAG- -5'
15958 5' -55 NC_004065.1 + 51874 0.67 0.960901
Target:  5'- -uCGGCAcgauugUCGUUGUCGAC-CCgcCAUCg -3'
miRNA:   3'- ccGCCGU------AGCAGCAGCUGaGGa-GUAG- -5'
15958 5' -55 NC_004065.1 + 167945 0.67 0.960558
Target:  5'- uGGCaGCGUCGgcgagcuUCGUCGGCUUgUCcacgAUCg -3'
miRNA:   3'- -CCGcCGUAGC-------AGCAGCUGAGgAG----UAG- -5'
15958 5' -55 NC_004065.1 + 36454 0.67 0.957376
Target:  5'- aGCGuGCAccUCGUcCG-CGAcCUCCUUAUCg -3'
miRNA:   3'- cCGC-CGU--AGCA-GCaGCU-GAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 203514 0.67 0.957376
Target:  5'- cGGCGGgGUcCGUCGcgUGACaugucuUCUUCGUCu -3'
miRNA:   3'- -CCGCCgUA-GCAGCa-GCUG------AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 119837 0.67 0.953639
Target:  5'- gGGCGGCGgcgCGUCG-CGGCcgCCgCAg- -3'
miRNA:   3'- -CCGCCGUa--GCAGCaGCUGa-GGaGUag -5'
15958 5' -55 NC_004065.1 + 67515 0.68 0.951294
Target:  5'- cGGCGGC-UCGUgCGgauguucaaccuagUGgcGCUCCUCGUCc -3'
miRNA:   3'- -CCGCCGuAGCA-GCa-------------GC--UGAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 189494 0.68 0.949688
Target:  5'- cGGCGGC-UCGagGagGACUuCCUCcUCu -3'
miRNA:   3'- -CCGCCGuAGCagCagCUGA-GGAGuAG- -5'
15958 5' -55 NC_004065.1 + 204522 0.68 0.949688
Target:  5'- cGGCGagacCGUCGUgGUCGccagACgCCUCGUCg -3'
miRNA:   3'- -CCGCc---GUAGCAgCAGC----UGaGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 124917 0.68 0.949688
Target:  5'- aGCGGCA-CGUCGUCGGCcaCCa---- -3'
miRNA:   3'- cCGCCGUaGCAGCAGCUGa-GGaguag -5'
15958 5' -55 NC_004065.1 + 21284 0.68 0.949688
Target:  5'- -aCGGCGUCaUgGUCGAUUCCgaaCAUCc -3'
miRNA:   3'- ccGCCGUAGcAgCAGCUGAGGa--GUAG- -5'
15958 5' -55 NC_004065.1 + 205347 0.68 0.945518
Target:  5'- -uCGGCAgCGUCGUCGcCUCCgauUCu -3'
miRNA:   3'- ccGCCGUaGCAGCAGCuGAGGaguAG- -5'
15958 5' -55 NC_004065.1 + 118652 0.68 0.945518
Target:  5'- -uCGGCGUCGgaCGaCGACgCCUCGUCc -3'
miRNA:   3'- ccGCCGUAGCa-GCaGCUGaGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 207509 0.68 0.945518
Target:  5'- cGCGGCGcgauagCgGUCGUCGGucCUCCUCGc- -3'
miRNA:   3'- cCGCCGUa-----G-CAGCAGCU--GAGGAGUag -5'
15958 5' -55 NC_004065.1 + 56140 0.68 0.938388
Target:  5'- aGGCGGCggCGgcccacacacacggCGUgaCGGCgCCUCAUCu -3'
miRNA:   3'- -CCGCCGuaGCa-------------GCA--GCUGaGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 31754 0.68 0.936516
Target:  5'- cGCGGUGUCGgacgCGUUGcACUgCUCGUg -3'
miRNA:   3'- cCGCCGUAGCa---GCAGC-UGAgGAGUAg -5'
15958 5' -55 NC_004065.1 + 115164 0.68 0.936516
Target:  5'- cGGCGGCAcCGUCGUCGccaggaugGC-CCUgGa- -3'
miRNA:   3'- -CCGCCGUaGCAGCAGC--------UGaGGAgUag -5'
15958 5' -55 NC_004065.1 + 107184 0.68 0.936516
Target:  5'- gGGCGGUcgagaCGggagcCGUCGACUgauaCCUCGUCc -3'
miRNA:   3'- -CCGCCGua---GCa----GCAGCUGA----GGAGUAG- -5'
15958 5' -55 NC_004065.1 + 109891 0.68 0.936516
Target:  5'- cGCGGCcgCGUCGggggguccCGGCUCgUCcgCc -3'
miRNA:   3'- cCGCCGuaGCAGCa-------GCUGAGgAGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.