miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 5' -55 NC_004065.1 + 3398 0.66 0.980076
Target:  5'- uGUGGCA-CGgu-UCGGCUCCUCGgaUCa -3'
miRNA:   3'- cCGCCGUaGCagcAGCUGAGGAGU--AG- -5'
15958 5' -55 NC_004065.1 + 6749 0.72 0.799489
Target:  5'- cGGCGGCAcUCGg-GUCGG-UCCUCGUg -3'
miRNA:   3'- -CCGCCGU-AGCagCAGCUgAGGAGUAg -5'
15958 5' -55 NC_004065.1 + 8036 0.72 0.763647
Target:  5'- cGCGGUAUCGUCuUCGGgUCCcgaCGUCg -3'
miRNA:   3'- cCGCCGUAGCAGcAGCUgAGGa--GUAG- -5'
15958 5' -55 NC_004065.1 + 17701 0.68 0.936516
Target:  5'- cGUGGcCGUCGUCGUCGcuuuguuguuGCgCCUCAg- -3'
miRNA:   3'- cCGCC-GUAGCAGCAGC----------UGaGGAGUag -5'
15958 5' -55 NC_004065.1 + 18499 0.7 0.884948
Target:  5'- cGgGGCGUCGUCGccacCGACgacCCUCAg- -3'
miRNA:   3'- cCgCCGUAGCAGCa---GCUGa--GGAGUag -5'
15958 5' -55 NC_004065.1 + 19572 0.66 0.970254
Target:  5'- cGGUGGCggCGguagCGUCGGCUgCgaaaaAUCg -3'
miRNA:   3'- -CCGCCGuaGCa---GCAGCUGAgGag---UAG- -5'
15958 5' -55 NC_004065.1 + 21284 0.68 0.949688
Target:  5'- -aCGGCGUCaUgGUCGAUUCCgaaCAUCc -3'
miRNA:   3'- ccGCCGUAGcAgCAGCUGAGGa--GUAG- -5'
15958 5' -55 NC_004065.1 + 21764 0.69 0.89542
Target:  5'- aGCGGUuccaccugaccgCGUucCGUCGGCUCCUCgGUCa -3'
miRNA:   3'- cCGCCGua----------GCA--GCAGCUGAGGAG-UAG- -5'
15958 5' -55 NC_004065.1 + 22919 0.69 0.918053
Target:  5'- uGGCGGCGgucggcgguuccgucUCGUCGUCaGAUugucgCCggCAUCg -3'
miRNA:   3'- -CCGCCGU---------------AGCAGCAG-CUGa----GGa-GUAG- -5'
15958 5' -55 NC_004065.1 + 25553 0.7 0.85645
Target:  5'- -aCGGCGUCGgCGUCGGCcccgcgCCUgAUCa -3'
miRNA:   3'- ccGCCGUAGCaGCAGCUGa-----GGAgUAG- -5'
15958 5' -55 NC_004065.1 + 27209 0.66 0.977886
Target:  5'- uGGCGGCgGUCGUgGUCGGCagCgUGUUg -3'
miRNA:   3'- -CCGCCG-UAGCAgCAGCUGagGaGUAG- -5'
15958 5' -55 NC_004065.1 + 27286 0.65 0.981905
Target:  5'- cGGCGGCGcCGcCGaCGACgcgucuaUCgUCGUCg -3'
miRNA:   3'- -CCGCCGUaGCaGCaGCUG-------AGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 27402 1.13 0.003597
Target:  5'- cGGCGGCAUCGUCGUCGACUCCUCAUCg -3'
miRNA:   3'- -CCGCCGUAGCAGCAGCUGAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 31301 0.69 0.919155
Target:  5'- cGGCGGCGUCGUCGUUcacauguggGACagagccagggccgCCUUAa- -3'
miRNA:   3'- -CCGCCGUAGCAGCAG---------CUGa------------GGAGUag -5'
15958 5' -55 NC_004065.1 + 31754 0.68 0.936516
Target:  5'- cGCGGUGUCGgacgCGUUGcACUgCUCGUg -3'
miRNA:   3'- cCGCCGUAGCa---GCAGC-UGAgGAGUAg -5'
15958 5' -55 NC_004065.1 + 32799 0.66 0.972982
Target:  5'- --gGGCcUCGUUGUCGuCgUCCUCGUa -3'
miRNA:   3'- ccgCCGuAGCAGCAGCuG-AGGAGUAg -5'
15958 5' -55 NC_004065.1 + 36454 0.67 0.957376
Target:  5'- aGCGuGCAccUCGUcCG-CGAcCUCCUUAUCg -3'
miRNA:   3'- cCGC-CGU--AGCA-GCaGCU-GAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 38564 0.69 0.907731
Target:  5'- uGGUGGUgccgcaccucggCGUCGagGACUCCUCgGUCg -3'
miRNA:   3'- -CCGCCGua----------GCAGCagCUGAGGAG-UAG- -5'
15958 5' -55 NC_004065.1 + 41117 0.66 0.970254
Target:  5'- cGGCaGGUGUCcggGUCGUCGggccgugaGCUUCUCGUg -3'
miRNA:   3'- -CCG-CCGUAG---CAGCAGC--------UGAGGAGUAg -5'
15958 5' -55 NC_004065.1 + 42332 0.68 0.926619
Target:  5'- cGCuGGCcuUCGU-GUCGAC-CCUCAUCc -3'
miRNA:   3'- cCG-CCGu-AGCAgCAGCUGaGGAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.