miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 5' -55 NC_004065.1 + 43391 0.66 0.977428
Target:  5'- cGGCGGCccgaccacccguucgAUCGUcaccauccuccucacCaUCGACacUCCUCAUCg -3'
miRNA:   3'- -CCGCCG---------------UAGCA---------------GcAGCUG--AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 45119 0.68 0.93168
Target:  5'- cGGCGGCGaaggCGacUCGUCGGa--CUCGUCc -3'
miRNA:   3'- -CCGCCGUa---GC--AGCAGCUgagGAGUAG- -5'
15958 5' -55 NC_004065.1 + 47654 0.69 0.923474
Target:  5'- uGGUGGUcaggcuggugucgcaGUCGUCGUCGgaaUCgUCGUCc -3'
miRNA:   3'- -CCGCCG---------------UAGCAGCAGCug-AGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 47861 0.71 0.824903
Target:  5'- uGGCGGCGUCGUagugggagaagaCGUCGGCcacgaagcCCUCGc- -3'
miRNA:   3'- -CCGCCGUAGCA------------GCAGCUGa-------GGAGUag -5'
15958 5' -55 NC_004065.1 + 51874 0.67 0.960901
Target:  5'- -uCGGCAcgauugUCGUUGUCGAC-CCgcCAUCg -3'
miRNA:   3'- ccGCCGU------AGCAGCAGCUGaGGa-GUAG- -5'
15958 5' -55 NC_004065.1 + 56140 0.68 0.938388
Target:  5'- aGGCGGCggCGgcccacacacacggCGUgaCGGCgCCUCAUCu -3'
miRNA:   3'- -CCGCCGuaGCa-------------GCA--GCUGaGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 57410 0.66 0.969399
Target:  5'- cGGCGGCAUauaacacagacguaCGUCGaUCGGCguuuucgCUUCuUCg -3'
miRNA:   3'- -CCGCCGUA--------------GCAGC-AGCUGa------GGAGuAG- -5'
15958 5' -55 NC_004065.1 + 58410 0.66 0.975523
Target:  5'- cGGCGGCAuguUCGcCGUCGAUUgUUUc-- -3'
miRNA:   3'- -CCGCCGU---AGCaGCAGCUGAgGAGuag -5'
15958 5' -55 NC_004065.1 + 59593 0.7 0.884948
Target:  5'- cGGCGGCGUCcuUCGUCGA-UCCgCcgCa -3'
miRNA:   3'- -CCGCCGUAGc-AGCAGCUgAGGaGuaG- -5'
15958 5' -55 NC_004065.1 + 67515 0.68 0.951294
Target:  5'- cGGCGGC-UCGUgCGgauguucaaccuagUGgcGCUCCUCGUCc -3'
miRNA:   3'- -CCGCCGuAGCA-GCa-------------GC--UGAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 75125 0.72 0.763647
Target:  5'- cGGCGGCuUCGaucgcgcgaUCGUCGAC-CC-CGUCu -3'
miRNA:   3'- -CCGCCGuAGC---------AGCAGCUGaGGaGUAG- -5'
15958 5' -55 NC_004065.1 + 75334 0.66 0.977886
Target:  5'- cGCGGCGUcCGUCG-CGuucgUCCUCGa- -3'
miRNA:   3'- cCGCCGUA-GCAGCaGCug--AGGAGUag -5'
15958 5' -55 NC_004065.1 + 76759 0.68 0.93168
Target:  5'- cGGCGGCcUCGUCaUCG--UCCggcgCAUCg -3'
miRNA:   3'- -CCGCCGuAGCAGcAGCugAGGa---GUAG- -5'
15958 5' -55 NC_004065.1 + 77111 0.67 0.960901
Target:  5'- cGGCGGCAgCGcCGcCGACa--UCGUCa -3'
miRNA:   3'- -CCGCCGUaGCaGCaGCUGaggAGUAG- -5'
15958 5' -55 NC_004065.1 + 78471 0.68 0.93168
Target:  5'- uGCGGCAgagGUCGUCgGugUCCUUg-- -3'
miRNA:   3'- cCGCCGUag-CAGCAG-CugAGGAGuag -5'
15958 5' -55 NC_004065.1 + 83966 0.75 0.617943
Target:  5'- aGCGGCAcUCGUCcUCGGCaUCCUCgGUCg -3'
miRNA:   3'- cCGCCGU-AGCAGcAGCUG-AGGAG-UAG- -5'
15958 5' -55 NC_004065.1 + 88038 0.7 0.890906
Target:  5'- cGCGGUAUCGUCGucaucgccgUCGcCUCCggagggaggaccgUCGUCg -3'
miRNA:   3'- cCGCCGUAGCAGC---------AGCuGAGG-------------AGUAG- -5'
15958 5' -55 NC_004065.1 + 89867 0.75 0.617943
Target:  5'- -cUGGUAUCGUUGUCGACggcgCCaUCGUCg -3'
miRNA:   3'- ccGCCGUAGCAGCAGCUGa---GG-AGUAG- -5'
15958 5' -55 NC_004065.1 + 96188 0.66 0.978782
Target:  5'- aGCGGCugguccgucUCGUCGUagaaguccgugucgGACUCCUCuUCu -3'
miRNA:   3'- cCGCCGu--------AGCAGCAg-------------CUGAGGAGuAG- -5'
15958 5' -55 NC_004065.1 + 96775 0.71 0.833054
Target:  5'- aGGCGGCAUCGcggccgucuUCGaCGACUCUUgGa- -3'
miRNA:   3'- -CCGCCGUAGC---------AGCaGCUGAGGAgUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.