miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 5' -55 NC_004065.1 + 97172 0.66 0.980076
Target:  5'- gGGCGGguUCcacuUCGg-GGCUCgUCGUCg -3'
miRNA:   3'- -CCGCCguAGc---AGCagCUGAGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 99257 0.72 0.771884
Target:  5'- uGCaGGUucucgacGUCGUCGUCGuccucCUCCUCGUCc -3'
miRNA:   3'- cCG-CCG-------UAGCAGCAGCu----GAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 99727 0.69 0.897952
Target:  5'- aGGCGGUuccccucUCGUCGUC--CUCCUCGc- -3'
miRNA:   3'- -CCGCCGu------AGCAGCAGcuGAGGAGUag -5'
15958 5' -55 NC_004065.1 + 102243 0.68 0.93168
Target:  5'- aGGCGcucgaCAUCGUCaUCcucaaGCUCCUCGUCg -3'
miRNA:   3'- -CCGCc----GUAGCAGcAGc----UGAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 102446 0.66 0.975523
Target:  5'- aGGCgcacuuGGCGagguaGUCGUCGACgUCCcacUCGUCg -3'
miRNA:   3'- -CCG------CCGUag---CAGCAGCUG-AGG---AGUAG- -5'
15958 5' -55 NC_004065.1 + 102457 0.68 0.93168
Target:  5'- cGGCGuGcCGUCGUCGUCuuCUuCCUCcUCc -3'
miRNA:   3'- -CCGC-C-GUAGCAGCAGcuGA-GGAGuAG- -5'
15958 5' -55 NC_004065.1 + 105567 0.66 0.972982
Target:  5'- aGCGGCAcggcgCGcCGUCGGCgggCUUCgaGUCg -3'
miRNA:   3'- cCGCCGUa----GCaGCAGCUGa--GGAG--UAG- -5'
15958 5' -55 NC_004065.1 + 106441 0.7 0.891558
Target:  5'- cGCgGGCGcUCGUCGUCGAUgCUgggCGUCg -3'
miRNA:   3'- cCG-CCGU-AGCAGCAGCUGaGGa--GUAG- -5'
15958 5' -55 NC_004065.1 + 107184 0.68 0.936516
Target:  5'- gGGCGGUcgagaCGggagcCGUCGACUgauaCCUCGUCc -3'
miRNA:   3'- -CCGCCGua---GCa----GCAGCUGA----GGAGUAG- -5'
15958 5' -55 NC_004065.1 + 109891 0.68 0.936516
Target:  5'- cGCGGCcgCGUCGggggguccCGGCUCgUCcgCc -3'
miRNA:   3'- cCGCCGuaGCAGCa-------GCUGAGgAGuaG- -5'
15958 5' -55 NC_004065.1 + 111371 0.67 0.967335
Target:  5'- aGGacgaGGCGUCGUCGUcCGACgCCg---- -3'
miRNA:   3'- -CCg---CCGUAGCAGCA-GCUGaGGaguag -5'
15958 5' -55 NC_004065.1 + 111724 0.66 0.975277
Target:  5'- aGgGGCAUCGcCGUCGcCUUCgccugcgacguggUCGUCa -3'
miRNA:   3'- cCgCCGUAGCaGCAGCuGAGG-------------AGUAG- -5'
15958 5' -55 NC_004065.1 + 115080 0.65 0.9821
Target:  5'- cGCGGCcUCG--GUCGGCUCUUCu-- -3'
miRNA:   3'- cCGCCGuAGCagCAGCUGAGGAGuag -5'
15958 5' -55 NC_004065.1 + 115164 0.68 0.936516
Target:  5'- cGGCGGCAcCGUCGUCGccaggaugGC-CCUgGa- -3'
miRNA:   3'- -CCGCCGUaGCAGCAGC--------UGaGGAgUag -5'
15958 5' -55 NC_004065.1 + 117817 0.67 0.964219
Target:  5'- cGGCGGUAUCGguaugauaUGUC--CUCCUuCAUCg -3'
miRNA:   3'- -CCGCCGUAGCa-------GCAGcuGAGGA-GUAG- -5'
15958 5' -55 NC_004065.1 + 117987 0.74 0.677399
Target:  5'- cGGUGGgGaucUUGUCGUCGuCgUCCUCGUCg -3'
miRNA:   3'- -CCGCCgU---AGCAGCAGCuG-AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 118043 0.69 0.915822
Target:  5'- aGGCGGCccugcUCGUCGUacACgUCUUCGUCc -3'
miRNA:   3'- -CCGCCGu----AGCAGCAgcUG-AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 118208 0.67 0.967335
Target:  5'- cGCGGCugacgcauucCGUCGUCGuCuUCUUCAUUg -3'
miRNA:   3'- cCGCCGua--------GCAGCAGCuG-AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 118229 0.65 0.9821
Target:  5'- cGGCGGuCAUCGgagcCGUCGACggaCgCGUg -3'
miRNA:   3'- -CCGCC-GUAGCa---GCAGCUGag-GaGUAg -5'
15958 5' -55 NC_004065.1 + 118349 0.66 0.975524
Target:  5'- -aUGGCGUCGgCGUCGGCgUCUggAUCg -3'
miRNA:   3'- ccGCCGUAGCaGCAGCUG-AGGagUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.