miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 5' -55 NC_004065.1 + 102243 0.68 0.93168
Target:  5'- aGGCGcucgaCAUCGUCaUCcucaaGCUCCUCGUCg -3'
miRNA:   3'- -CCGCc----GUAGCAGcAGc----UGAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 132221 0.7 0.891558
Target:  5'- cGCGGCucUCGUCGgugaucagcacCGuCUCCUCGUUg -3'
miRNA:   3'- cCGCCGu-AGCAGCa----------GCuGAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 172390 0.69 0.90413
Target:  5'- uGGCGGagAUCGUauaacUCGACUCCUUGUg -3'
miRNA:   3'- -CCGCCg-UAGCAgc---AGCUGAGGAGUAg -5'
15958 5' -55 NC_004065.1 + 149063 0.69 0.910087
Target:  5'- cGGCGGCAggccgaucggggUCGUCGUC-ACga-UCGUCu -3'
miRNA:   3'- -CCGCCGU------------AGCAGCAGcUGaggAGUAG- -5'
15958 5' -55 NC_004065.1 + 118043 0.69 0.915822
Target:  5'- aGGCGGCccugcUCGUCGUacACgUCUUCGUCc -3'
miRNA:   3'- -CCGCCGu----AGCAGCAgcUG-AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 22919 0.69 0.918053
Target:  5'- uGGCGGCGgucggcgguuccgucUCGUCGUCaGAUugucgCCggCAUCg -3'
miRNA:   3'- -CCGCCGU---------------AGCAGCAG-CUGa----GGa-GUAG- -5'
15958 5' -55 NC_004065.1 + 31301 0.69 0.919155
Target:  5'- cGGCGGCGUCGUCGUUcacauguggGACagagccagggccgCCUUAa- -3'
miRNA:   3'- -CCGCCGUAGCAGCAG---------CUGa------------GGAGUag -5'
15958 5' -55 NC_004065.1 + 47654 0.69 0.923474
Target:  5'- uGGUGGUcaggcuggugucgcaGUCGUCGUCGgaaUCgUCGUCc -3'
miRNA:   3'- -CCGCCG---------------UAGCAGCAGCug-AGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 42332 0.68 0.926619
Target:  5'- cGCuGGCcuUCGU-GUCGAC-CCUCAUCc -3'
miRNA:   3'- cCG-CCGu-AGCAgCAGCUGaGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 161887 0.7 0.884948
Target:  5'- cGGCGGCcugaccgaCGcUCGUCGACcggUCaCUCGUCu -3'
miRNA:   3'- -CCGCCGua------GC-AGCAGCUG---AG-GAGUAG- -5'
15958 5' -55 NC_004065.1 + 18499 0.7 0.884948
Target:  5'- cGgGGCGUCGUCGccacCGACgacCCUCAg- -3'
miRNA:   3'- cCgCCGUAGCAGCa---GCUGa--GGAGUag -5'
15958 5' -55 NC_004065.1 + 25553 0.7 0.85645
Target:  5'- -aCGGCGUCGgCGUCGGCcccgcgCCUgAUCa -3'
miRNA:   3'- ccGCCGUAGCaGCAGCUGa-----GGAgUAG- -5'
15958 5' -55 NC_004065.1 + 200755 0.76 0.549109
Target:  5'- aGGCGGCucacgCGUCgGUCG-CUCuCUCGUCg -3'
miRNA:   3'- -CCGCCGua---GCAG-CAGCuGAG-GAGUAG- -5'
15958 5' -55 NC_004065.1 + 142010 0.75 0.598128
Target:  5'- cGGCGG-AUCGUCGaCGACgUCgUCGUCg -3'
miRNA:   3'- -CCGCCgUAGCAGCaGCUG-AGgAGUAG- -5'
15958 5' -55 NC_004065.1 + 130547 0.73 0.754392
Target:  5'- cGGCGGCAUC-UCGcaCGuCUCCUgGUCc -3'
miRNA:   3'- -CCGCCGUAGcAGCa-GCuGAGGAgUAG- -5'
15958 5' -55 NC_004065.1 + 118440 0.72 0.763647
Target:  5'- cGGCGGCGUCcUCGUC--UUCCUCGg- -3'
miRNA:   3'- -CCGCCGUAGcAGCAGcuGAGGAGUag -5'
15958 5' -55 NC_004065.1 + 99257 0.72 0.771884
Target:  5'- uGCaGGUucucgacGUCGUCGUCGuccucCUCCUCGUCc -3'
miRNA:   3'- cCG-CCG-------UAGCAGCAGCu----GAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 150230 0.71 0.816587
Target:  5'- aGCGGCGUCGUCaGgaucagCcGCUCCUCcUCg -3'
miRNA:   3'- cCGCCGUAGCAG-Ca-----GcUGAGGAGuAG- -5'
15958 5' -55 NC_004065.1 + 47861 0.71 0.824903
Target:  5'- uGGCGGCGUCGUagugggagaagaCGUCGGCcacgaagcCCUCGc- -3'
miRNA:   3'- -CCGCCGUAGCA------------GCAGCUGa-------GGAGUag -5'
15958 5' -55 NC_004065.1 + 96775 0.71 0.833054
Target:  5'- aGGCGGCAUCGcggccgucuUCGaCGACUCUUgGa- -3'
miRNA:   3'- -CCGCCGUAGC---------AGCaGCUGAGGAgUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.