Results 1 - 20 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15958 | 5' | -55 | NC_004065.1 | + | 133462 | 0.82 | 0.301121 |
Target: 5'- cGCGGC-UCGUCGgcggacgaguccagCGACUCCUCGUCc -3' miRNA: 3'- cCGCCGuAGCAGCa-------------GCUGAGGAGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 99727 | 0.69 | 0.897952 |
Target: 5'- aGGCGGUuccccucUCGUCGUC--CUCCUCGc- -3' miRNA: 3'- -CCGCCGu------AGCAGCAGcuGAGGAGUag -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 78471 | 0.68 | 0.93168 |
Target: 5'- uGCGGCAgagGUCGUCgGugUCCUUg-- -3' miRNA: 3'- cCGCCGUag-CAGCAG-CugAGGAGuag -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 118229 | 0.65 | 0.9821 |
Target: 5'- cGGCGGuCAUCGgagcCGUCGACggaCgCGUg -3' miRNA: 3'- -CCGCC-GUAGCa---GCAGCUGag-GaGUAg -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 89867 | 0.75 | 0.617943 |
Target: 5'- -cUGGUAUCGUUGUCGACggcgCCaUCGUCg -3' miRNA: 3'- ccGCCGUAGCAGCAGCUGa---GG-AGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 117987 | 0.74 | 0.677399 |
Target: 5'- cGGUGGgGaucUUGUCGUCGuCgUCCUCGUCg -3' miRNA: 3'- -CCGCCgU---AGCAGCAGCuG-AGGAGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 75125 | 0.72 | 0.763647 |
Target: 5'- cGGCGGCuUCGaucgcgcgaUCGUCGAC-CC-CGUCu -3' miRNA: 3'- -CCGCCGuAGC---------AGCAGCUGaGGaGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 6749 | 0.72 | 0.799489 |
Target: 5'- cGGCGGCAcUCGg-GUCGG-UCCUCGUg -3' miRNA: 3'- -CCGCCGU-AGCagCAGCUgAGGAGUAg -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 59593 | 0.7 | 0.884948 |
Target: 5'- cGGCGGCGUCcuUCGUCGA-UCCgCcgCa -3' miRNA: 3'- -CCGCCGUAGc-AGCAGCUgAGGaGuaG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 122826 | 0.69 | 0.897952 |
Target: 5'- gGGacgaGGUAUCaGUCGaCGGCUCC-CGUCu -3' miRNA: 3'- -CCg---CCGUAG-CAGCaGCUGAGGaGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 88038 | 0.7 | 0.890906 |
Target: 5'- cGCGGUAUCGUCGucaucgccgUCGcCUCCggagggaggaccgUCGUCg -3' miRNA: 3'- cCGCCGUAGCAGC---------AGCuGAGG-------------AGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 199179 | 0.7 | 0.884948 |
Target: 5'- --aGGCugGUCGUCGUCGGCU--UCGUCg -3' miRNA: 3'- ccgCCG--UAGCAGCAGCUGAggAGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 157026 | 0.79 | 0.420662 |
Target: 5'- uGGCGGCAUCGUCGcccUCG--UCCUCGUg -3' miRNA: 3'- -CCGCCGUAGCAGC---AGCugAGGAGUAg -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 106441 | 0.7 | 0.891558 |
Target: 5'- cGCgGGCGcUCGUCGUCGAUgCUgggCGUCg -3' miRNA: 3'- cCG-CCGU-AGCAGCAGCUGaGGa--GUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 210878 | 0.78 | 0.492082 |
Target: 5'- cGGCaGCAUCGUCGUCGucCUCggCAUCu -3' miRNA: 3'- -CCGcCGUAGCAGCAGCu-GAGgaGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 171422 | 0.71 | 0.824903 |
Target: 5'- cGCGcGCGUCGaUC-UCGACUCCgccgUCGUCg -3' miRNA: 3'- cCGC-CGUAGC-AGcAGCUGAGG----AGUAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 21764 | 0.69 | 0.89542 |
Target: 5'- aGCGGUuccaccugaccgCGUucCGUCGGCUCCUCgGUCa -3' miRNA: 3'- cCGCCGua----------GCA--GCAGCUGAGGAG-UAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 38564 | 0.69 | 0.907731 |
Target: 5'- uGGUGGUgccgcaccucggCGUCGagGACUCCUCgGUCg -3' miRNA: 3'- -CCGCCGua----------GCAGCagCUGAGGAG-UAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 83966 | 0.75 | 0.617943 |
Target: 5'- aGCGGCAcUCGUCcUCGGCaUCCUCgGUCg -3' miRNA: 3'- cCGCCGU-AGCAGcAGCUG-AGGAG-UAG- -5' |
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15958 | 5' | -55 | NC_004065.1 | + | 8036 | 0.72 | 0.763647 |
Target: 5'- cGCGGUAUCGUCuUCGGgUCCcgaCGUCg -3' miRNA: 3'- cCGCCGUAGCAGcAGCUgAGGa--GUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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