miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 5' -55 NC_004065.1 + 133462 0.82 0.301121
Target:  5'- cGCGGC-UCGUCGgcggacgaguccagCGACUCCUCGUCc -3'
miRNA:   3'- cCGCCGuAGCAGCa-------------GCUGAGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 99727 0.69 0.897952
Target:  5'- aGGCGGUuccccucUCGUCGUC--CUCCUCGc- -3'
miRNA:   3'- -CCGCCGu------AGCAGCAGcuGAGGAGUag -5'
15958 5' -55 NC_004065.1 + 78471 0.68 0.93168
Target:  5'- uGCGGCAgagGUCGUCgGugUCCUUg-- -3'
miRNA:   3'- cCGCCGUag-CAGCAG-CugAGGAGuag -5'
15958 5' -55 NC_004065.1 + 118229 0.65 0.9821
Target:  5'- cGGCGGuCAUCGgagcCGUCGACggaCgCGUg -3'
miRNA:   3'- -CCGCC-GUAGCa---GCAGCUGag-GaGUAg -5'
15958 5' -55 NC_004065.1 + 89867 0.75 0.617943
Target:  5'- -cUGGUAUCGUUGUCGACggcgCCaUCGUCg -3'
miRNA:   3'- ccGCCGUAGCAGCAGCUGa---GG-AGUAG- -5'
15958 5' -55 NC_004065.1 + 117987 0.74 0.677399
Target:  5'- cGGUGGgGaucUUGUCGUCGuCgUCCUCGUCg -3'
miRNA:   3'- -CCGCCgU---AGCAGCAGCuG-AGGAGUAG- -5'
15958 5' -55 NC_004065.1 + 75125 0.72 0.763647
Target:  5'- cGGCGGCuUCGaucgcgcgaUCGUCGAC-CC-CGUCu -3'
miRNA:   3'- -CCGCCGuAGC---------AGCAGCUGaGGaGUAG- -5'
15958 5' -55 NC_004065.1 + 6749 0.72 0.799489
Target:  5'- cGGCGGCAcUCGg-GUCGG-UCCUCGUg -3'
miRNA:   3'- -CCGCCGU-AGCagCAGCUgAGGAGUAg -5'
15958 5' -55 NC_004065.1 + 59593 0.7 0.884948
Target:  5'- cGGCGGCGUCcuUCGUCGA-UCCgCcgCa -3'
miRNA:   3'- -CCGCCGUAGc-AGCAGCUgAGGaGuaG- -5'
15958 5' -55 NC_004065.1 + 122826 0.69 0.897952
Target:  5'- gGGacgaGGUAUCaGUCGaCGGCUCC-CGUCu -3'
miRNA:   3'- -CCg---CCGUAG-CAGCaGCUGAGGaGUAG- -5'
15958 5' -55 NC_004065.1 + 88038 0.7 0.890906
Target:  5'- cGCGGUAUCGUCGucaucgccgUCGcCUCCggagggaggaccgUCGUCg -3'
miRNA:   3'- cCGCCGUAGCAGC---------AGCuGAGG-------------AGUAG- -5'
15958 5' -55 NC_004065.1 + 199179 0.7 0.884948
Target:  5'- --aGGCugGUCGUCGUCGGCU--UCGUCg -3'
miRNA:   3'- ccgCCG--UAGCAGCAGCUGAggAGUAG- -5'
15958 5' -55 NC_004065.1 + 157026 0.79 0.420662
Target:  5'- uGGCGGCAUCGUCGcccUCG--UCCUCGUg -3'
miRNA:   3'- -CCGCCGUAGCAGC---AGCugAGGAGUAg -5'
15958 5' -55 NC_004065.1 + 106441 0.7 0.891558
Target:  5'- cGCgGGCGcUCGUCGUCGAUgCUgggCGUCg -3'
miRNA:   3'- cCG-CCGU-AGCAGCAGCUGaGGa--GUAG- -5'
15958 5' -55 NC_004065.1 + 210878 0.78 0.492082
Target:  5'- cGGCaGCAUCGUCGUCGucCUCggCAUCu -3'
miRNA:   3'- -CCGcCGUAGCAGCAGCu-GAGgaGUAG- -5'
15958 5' -55 NC_004065.1 + 171422 0.71 0.824903
Target:  5'- cGCGcGCGUCGaUC-UCGACUCCgccgUCGUCg -3'
miRNA:   3'- cCGC-CGUAGC-AGcAGCUGAGG----AGUAG- -5'
15958 5' -55 NC_004065.1 + 21764 0.69 0.89542
Target:  5'- aGCGGUuccaccugaccgCGUucCGUCGGCUCCUCgGUCa -3'
miRNA:   3'- cCGCCGua----------GCA--GCAGCUGAGGAG-UAG- -5'
15958 5' -55 NC_004065.1 + 38564 0.69 0.907731
Target:  5'- uGGUGGUgccgcaccucggCGUCGagGACUCCUCgGUCg -3'
miRNA:   3'- -CCGCCGua----------GCAGCagCUGAGGAG-UAG- -5'
15958 5' -55 NC_004065.1 + 83966 0.75 0.617943
Target:  5'- aGCGGCAcUCGUCcUCGGCaUCCUCgGUCg -3'
miRNA:   3'- cCGCCGU-AGCAGcAGCUG-AGGAG-UAG- -5'
15958 5' -55 NC_004065.1 + 8036 0.72 0.763647
Target:  5'- cGCGGUAUCGUCuUCGGgUCCcgaCGUCg -3'
miRNA:   3'- cCGCCGUAGCAGcAGCUgAGGa--GUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.