miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15959 3' -53.7 NC_004065.1 + 23656 0.66 0.987895
Target:  5'- cGCAGGAGCCcGUUcacaauacacaCGGUUCCCCGu -3'
miRNA:   3'- -CGUUCUUGGaCGAcaa--------GUCAGGGGGC- -5'
15959 3' -53.7 NC_004065.1 + 204112 0.66 0.986988
Target:  5'- gGCGGGAACCUGCgcaUGgcCuGgCCCgCCGg -3'
miRNA:   3'- -CGUUCUUGGACG---ACaaGuCaGGG-GGC- -5'
15959 3' -53.7 NC_004065.1 + 32893 0.66 0.986988
Target:  5'- gGCGAGcgucuGCC-GCUGggCA-UCCCCCa -3'
miRNA:   3'- -CGUUCu----UGGaCGACaaGUcAGGGGGc -5'
15959 3' -53.7 NC_004065.1 + 118019 0.66 0.985361
Target:  5'- gGCGAGAAacuCUUGUUGUcgUAGgcggCCCCCu -3'
miRNA:   3'- -CGUUCUU---GGACGACAa-GUCa---GGGGGc -5'
15959 3' -53.7 NC_004065.1 + 201228 0.66 0.985361
Target:  5'- uGCAgAGGACCcgcgaGCUGUUC--UCCUCCGu -3'
miRNA:   3'- -CGU-UCUUGGa----CGACAAGucAGGGGGC- -5'
15959 3' -53.7 NC_004065.1 + 108370 0.66 0.983582
Target:  5'- cGCGGGGagucugucuuACCUGCUGgagcuaCAcGUCCCCg- -3'
miRNA:   3'- -CGUUCU----------UGGACGACaa----GU-CAGGGGgc -5'
15959 3' -53.7 NC_004065.1 + 229987 0.66 0.983018
Target:  5'- cGUAGGGACCUaGC---UCAGUaccacuuuuuauccCCCCCGg -3'
miRNA:   3'- -CGUUCUUGGA-CGacaAGUCA--------------GGGGGC- -5'
15959 3' -53.7 NC_004065.1 + 195500 0.66 0.981645
Target:  5'- cGCGGGAGCCcGCg--UCAGagCgCCCGg -3'
miRNA:   3'- -CGUUCUUGGaCGacaAGUCa-GgGGGC- -5'
15959 3' -53.7 NC_004065.1 + 99702 0.66 0.981645
Target:  5'- aGCGAGAGCUcccgggaGCUGacgaaggCGGUUCCCCu -3'
miRNA:   3'- -CGUUCUUGGa------CGACaa-----GUCAGGGGGc -5'
15959 3' -53.7 NC_004065.1 + 202317 0.67 0.969315
Target:  5'- --cAGGAUCUGCUc-UCGGUCCgCCGg -3'
miRNA:   3'- cguUCUUGGACGAcaAGUCAGGgGGC- -5'
15959 3' -53.7 NC_004065.1 + 80314 0.67 0.966272
Target:  5'- cCGAGGGCCgGCgcgGccgCGGcCCCCCGg -3'
miRNA:   3'- cGUUCUUGGaCGa--Caa-GUCaGGGGGC- -5'
15959 3' -53.7 NC_004065.1 + 176243 0.68 0.951981
Target:  5'- cGCGcaGACCUGCUGggcucgCGGaUCCUCCa -3'
miRNA:   3'- -CGUucUUGGACGACaa----GUC-AGGGGGc -5'
15959 3' -53.7 NC_004065.1 + 89163 0.69 0.93892
Target:  5'- -gAGGAACUUGUUGUggaagCGGUUCUCCa -3'
miRNA:   3'- cgUUCUUGGACGACAa----GUCAGGGGGc -5'
15959 3' -53.7 NC_004065.1 + 83775 0.69 0.923234
Target:  5'- -gAAGAucuuCCUGCUGUUCgugucacAGUUCUCCGu -3'
miRNA:   3'- cgUUCUu---GGACGACAAG-------UCAGGGGGC- -5'
15959 3' -53.7 NC_004065.1 + 112373 0.7 0.88722
Target:  5'- uGCAAGGugUUGUUG-UCGGUCCgUCGu -3'
miRNA:   3'- -CGUUCUugGACGACaAGUCAGGgGGC- -5'
15959 3' -53.7 NC_004065.1 + 147189 0.7 0.88722
Target:  5'- gGCAAGuACCUGCUcucCGGcUUCCCCGa -3'
miRNA:   3'- -CGUUCuUGGACGAcaaGUC-AGGGGGC- -5'
15959 3' -53.7 NC_004065.1 + 204431 0.7 0.88722
Target:  5'- uCGAGAucgGCCUGCUGcUCAGccgCCUCUGg -3'
miRNA:   3'- cGUUCU---UGGACGACaAGUCa--GGGGGC- -5'
15959 3' -53.7 NC_004065.1 + 51671 0.73 0.762214
Target:  5'- aCAAGAACCUGCccuucagaccUCAGUCCCCa- -3'
miRNA:   3'- cGUUCUUGGACGaca-------AGUCAGGGGgc -5'
15959 3' -53.7 NC_004065.1 + 27970 1.1 0.005865
Target:  5'- aGCAAGAACCUGCUGUUCAGUCCCCCGc -3'
miRNA:   3'- -CGUUCUUGGACGACAAGUCAGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.