miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15959 5' -58.5 NC_004065.1 + 66105 0.66 0.885441
Target:  5'- aCGCGcuGGGGGGCGAcaucaccgAGGCgCUG-GCGc -3'
miRNA:   3'- -GCGC--UCCCCCGCU--------UCUGgGACaUGUa -5'
15959 5' -58.5 NC_004065.1 + 102994 0.66 0.874548
Target:  5'- aGCGuGGGGGaGGAGAUguucaacaacuuucgCCUGUACu- -3'
miRNA:   3'- gCGCuCCCCCgCUUCUG---------------GGACAUGua -5'
15959 5' -58.5 NC_004065.1 + 63458 0.66 0.871744
Target:  5'- -cCGAGcGGGUGGAcGACCCgGUGCAg -3'
miRNA:   3'- gcGCUCcCCCGCUU-CUGGGaCAUGUa -5'
15959 5' -58.5 NC_004065.1 + 188365 0.66 0.864596
Target:  5'- aGCGAGGGGGCGcacGugUUguucacGUGCAg -3'
miRNA:   3'- gCGCUCCCCCGCuu-CugGGa-----CAUGUa -5'
15959 5' -58.5 NC_004065.1 + 129745 0.67 0.857253
Target:  5'- uGCGAGGuGGGCGA--GCagCUGUACc- -3'
miRNA:   3'- gCGCUCC-CCCGCUucUGg-GACAUGua -5'
15959 5' -58.5 NC_004065.1 + 201678 0.67 0.857253
Target:  5'- aGCGAGGcugcGGCGGcacaacgcggacAGGCCCUGUcCGUc -3'
miRNA:   3'- gCGCUCCc---CCGCU------------UCUGGGACAuGUA- -5'
15959 5' -58.5 NC_004065.1 + 163830 0.67 0.838874
Target:  5'- aGCGGGGGGGagcccaagcgccaGAAGACCCaccACGa -3'
miRNA:   3'- gCGCUCCCCCg------------CUUCUGGGacaUGUa -5'
15959 5' -58.5 NC_004065.1 + 20751 0.67 0.825244
Target:  5'- gGCGAGGGugaagagggugauGGCGAucGCCCUagcGUACAg -3'
miRNA:   3'- gCGCUCCC-------------CCGCUucUGGGA---CAUGUa -5'
15959 5' -58.5 NC_004065.1 + 143267 0.67 0.817837
Target:  5'- cCGCGGcGGGGGCGGcagcuucaaGGGCCgaGgcgGCGUc -3'
miRNA:   3'- -GCGCU-CCCCCGCU---------UCUGGgaCa--UGUA- -5'
15959 5' -58.5 NC_004065.1 + 31302 0.68 0.800929
Target:  5'- aCGCGAGGGuuGCGAGGAuacgggguguCCCUcGUGCu- -3'
miRNA:   3'- -GCGCUCCCc-CGCUUCU----------GGGA-CAUGua -5'
15959 5' -58.5 NC_004065.1 + 116364 0.68 0.79226
Target:  5'- aGCGAGaGGGCGggGaACCCg--GCGc -3'
miRNA:   3'- gCGCUCcCCCGCuuC-UGGGacaUGUa -5'
15959 5' -58.5 NC_004065.1 + 88202 0.69 0.72828
Target:  5'- aGuCGAGGGGGCGggGAgguCCCgaaUACu- -3'
miRNA:   3'- gC-GCUCCCCCGCuuCU---GGGac-AUGua -5'
15959 5' -58.5 NC_004065.1 + 181981 0.69 0.718767
Target:  5'- gGUGuccguGGGGGaUGAGGACCCgcaGUACGUc -3'
miRNA:   3'- gCGCu----CCCCC-GCUUCUGGGa--CAUGUA- -5'
15959 5' -58.5 NC_004065.1 + 87078 0.7 0.650704
Target:  5'- gCGCGAGGuGGGCaGcuGGCCCUGgUGCc- -3'
miRNA:   3'- -GCGCUCC-CCCG-CuuCUGGGAC-AUGua -5'
15959 5' -58.5 NC_004065.1 + 153186 0.71 0.621175
Target:  5'- aGCGAGGGauCccAGGCCCUGUACAUc -3'
miRNA:   3'- gCGCUCCCccGcuUCUGGGACAUGUA- -5'
15959 5' -58.5 NC_004065.1 + 129995 0.73 0.514767
Target:  5'- cCGCGGGGGcGGCGGAcgaggcGAUgCUGUACGg -3'
miRNA:   3'- -GCGCUCCC-CCGCUU------CUGgGACAUGUa -5'
15959 5' -58.5 NC_004065.1 + 169250 0.73 0.514767
Target:  5'- uCGCGAGGcGGGaGGccgcGGCCCUGUGCGg -3'
miRNA:   3'- -GCGCUCC-CCCgCUu---CUGGGACAUGUa -5'
15959 5' -58.5 NC_004065.1 + 28005 1.06 0.003906
Target:  5'- cCGCGAGGGGGCGAAGACCCUGUACAUg -3'
miRNA:   3'- -GCGCUCCCCCGCUUCUGGGACAUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.