Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1596 | 3' | -62.3 | NC_001347.2 | + | 17017 | 0.66 | 0.744877 |
Target: 5'- aUUUGGcagGCGCGCgUGGUCCG-CGGCg- -3' miRNA: 3'- -AGACCa--CGUGCG-GCCAGGUgGCCGgu -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 87606 | 0.66 | 0.708025 |
Target: 5'- --cGGUGCACGCCcGUgcCCACCaGCg- -3' miRNA: 3'- agaCCACGUGCGGcCA--GGUGGcCGgu -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 87494 | 0.66 | 0.735775 |
Target: 5'- gCUGucgaUGCACGCCaGcuUCCACUGGUCGu -3' miRNA: 3'- aGACc---ACGUGCGGcC--AGGUGGCCGGU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 7012 | 0.66 | 0.735775 |
Target: 5'- -----aGCACgauGCCGGUCCACCagaugauauugaGGCCGg -3' miRNA: 3'- agaccaCGUG---CGGCCAGGUGG------------CCGGU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 126611 | 0.66 | 0.735775 |
Target: 5'- gUCUGcGUGCACuaC-GUCUACCuGGCCu -3' miRNA: 3'- -AGAC-CACGUGcgGcCAGGUGG-CCGGu -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 78937 | 0.66 | 0.735775 |
Target: 5'- gCUGG-GCACGCUGGaCCccguACCcgaGGCCu -3' miRNA: 3'- aGACCaCGUGCGGCCaGG----UGG---CCGGu -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 76961 | 0.66 | 0.735775 |
Target: 5'- cCUGGaUGCuggaagucuUGCCGGcgcCCGCCGuGCCGg -3' miRNA: 3'- aGACC-ACGu--------GCGGCCa--GGUGGC-CGGU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 21412 | 0.66 | 0.744877 |
Target: 5'- gCUGGUGgcuCAUGCCG--CCACCGGUg- -3' miRNA: 3'- aGACCAC---GUGCGGCcaGGUGGCCGgu -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 97575 | 0.66 | 0.735775 |
Target: 5'- -----aGCACGCUGGUaC-CCGGCCAa -3' miRNA: 3'- agaccaCGUGCGGCCAgGuGGCCGGU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 151348 | 0.67 | 0.651205 |
Target: 5'- cUCUGGUGgCGCGUgGGcCCAgcCUGGCgCAc -3' miRNA: 3'- -AGACCAC-GUGCGgCCaGGU--GGCCG-GU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 158675 | 0.67 | 0.651205 |
Target: 5'- gUCggGGcGCGCGCUGGUuaaacagaCCGCCuGCCAc -3' miRNA: 3'- -AGa-CCaCGUGCGGCCA--------GGUGGcCGGU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 192230 | 0.67 | 0.660749 |
Target: 5'- --cGGUGUauauaaaccGCGUCGGcCuCGCCGGCCc -3' miRNA: 3'- agaCCACG---------UGCGGCCaG-GUGGCCGGu -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 25625 | 0.67 | 0.651205 |
Target: 5'- cCUGGacgGUACGuuGGUCaucUCGGCCGc -3' miRNA: 3'- aGACCa--CGUGCggCCAGgu-GGCCGGU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 156635 | 0.67 | 0.698652 |
Target: 5'- gCUGGcgGCGCcgcuGCCGGgccucggCCGCCGccGCCAc -3' miRNA: 3'- aGACCa-CGUG----CGGCCa------GGUGGC--CGGU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 183577 | 0.67 | 0.679769 |
Target: 5'- --aGGUGCACGCUGauGUCCuCgGGCUu -3' miRNA: 3'- agaCCACGUGCGGC--CAGGuGgCCGGu -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 208705 | 0.68 | 0.632084 |
Target: 5'- ---cGUGCACGUCGG-CCACCaGcGCCGu -3' miRNA: 3'- agacCACGUGCGGCCaGGUGG-C-CGGU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 26871 | 0.68 | 0.63591 |
Target: 5'- -gUGGUcgGCACGCUGGgaccaaauguucagCUACCuGGCCAa -3' miRNA: 3'- agACCA--CGUGCGGCCa-------------GGUGG-CCGGU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 24634 | 0.68 | 0.632084 |
Target: 5'- gCUGGUGCuauuacuCGCCGG-CCucCUGGCgCAc -3' miRNA: 3'- aGACCACGu------GCGGCCaGGu-GGCCG-GU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 17333 | 0.68 | 0.62252 |
Target: 5'- --cGGUugccGCGCGUaUGG-CCGCCGGCCAc -3' miRNA: 3'- agaCCA----CGUGCG-GCCaGGUGGCCGGU- -5' |
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1596 | 3' | -62.3 | NC_001347.2 | + | 73572 | 0.69 | 0.584391 |
Target: 5'- -aUGG-GCGCGCacgCGGacaaagacCCACCGGCCAc -3' miRNA: 3'- agACCaCGUGCG---GCCa-------GGUGGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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