miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1596 3' -62.3 NC_001347.2 + 173216 1.08 0.001502
Target:  5'- uUCUGGUGCACGCCGGUCCACCGGCCAu -3'
miRNA:   3'- -AGACCACGUGCGGCCAGGUGGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 159282 0.78 0.176635
Target:  5'- aCUGGUGCuggcgGCGCCGGgcgCCA-CGGCCAc -3'
miRNA:   3'- aGACCACG-----UGCGGCCa--GGUgGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 187521 0.73 0.360202
Target:  5'- --cGGUGCgcgagACGCUGGUcacagCCAUCGGCCAg -3'
miRNA:   3'- agaCCACG-----UGCGGCCA-----GGUGGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 154293 0.73 0.367685
Target:  5'- -gUGGUGCucaugACGCCGGU--GCCGGCCc -3'
miRNA:   3'- agACCACG-----UGCGGCCAggUGGCCGGu -5'
1596 3' -62.3 NC_001347.2 + 88535 0.71 0.465379
Target:  5'- -gUGGUG-ACGCCG--CCGCCGGCCu -3'
miRNA:   3'- agACCACgUGCGGCcaGGUGGCCGGu -5'
1596 3' -62.3 NC_001347.2 + 18397 0.7 0.490964
Target:  5'- cCUGGUcauccGCACGCCgGGUCgCACCGagguggaGCCGu -3'
miRNA:   3'- aGACCA-----CGUGCGG-CCAG-GUGGC-------CGGU- -5'
1596 3' -62.3 NC_001347.2 + 189865 0.7 0.500839
Target:  5'- --cGGUaGCGCGCCGGgucgCCuguCCGGCa- -3'
miRNA:   3'- agaCCA-CGUGCGGCCa---GGu--GGCCGgu -5'
1596 3' -62.3 NC_001347.2 + 199778 0.7 0.519012
Target:  5'- cUUGGcG-GCGCCGGUgCCGCCGGUCu -3'
miRNA:   3'- aGACCaCgUGCGGCCA-GGUGGCCGGu -5'
1596 3' -62.3 NC_001347.2 + 77045 0.69 0.556089
Target:  5'- --aGG-GCACGCgCGuG-CCGCCGGCCu -3'
miRNA:   3'- agaCCaCGUGCG-GC-CaGGUGGCCGGu -5'
1596 3' -62.3 NC_001347.2 + 41222 0.69 0.563601
Target:  5'- gCUGGUGCAUGUgGGgacgcuucggaaCCAUgGGCCGc -3'
miRNA:   3'- aGACCACGUGCGgCCa-----------GGUGgCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 126879 0.69 0.574919
Target:  5'- cUUGGgGCugGCCGG-CUACggCGGCCGc -3'
miRNA:   3'- aGACCaCGugCGGCCaGGUG--GCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 14207 0.69 0.574919
Target:  5'- uUCUGucaGUG-ACGCCGGUUguCCGGCUg -3'
miRNA:   3'- -AGAC---CACgUGCGGCCAGguGGCCGGu -5'
1596 3' -62.3 NC_001347.2 + 73572 0.69 0.584391
Target:  5'- -aUGG-GCGCGCacgCGGacaaagacCCACCGGCCAc -3'
miRNA:   3'- agACCaCGUGCG---GCCa-------GGUGGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 157059 0.69 0.584391
Target:  5'- gCUGGUGCugGCucugcuguggcgCGGUCa--UGGCCAg -3'
miRNA:   3'- aGACCACGugCG------------GCCAGgugGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 17333 0.68 0.62252
Target:  5'- --cGGUugccGCGCGUaUGG-CCGCCGGCCAc -3'
miRNA:   3'- agaCCA----CGUGCG-GCCaGGUGGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 208705 0.68 0.632084
Target:  5'- ---cGUGCACGUCGG-CCACCaGcGCCGu -3'
miRNA:   3'- agacCACGUGCGGCCaGGUGG-C-CGGU- -5'
1596 3' -62.3 NC_001347.2 + 24634 0.68 0.632084
Target:  5'- gCUGGUGCuauuacuCGCCGG-CCucCUGGCgCAc -3'
miRNA:   3'- aGACCACGu------GCGGCCaGGu-GGCCG-GU- -5'
1596 3' -62.3 NC_001347.2 + 26871 0.68 0.63591
Target:  5'- -gUGGUcgGCACGCUGGgaccaaauguucagCUACCuGGCCAa -3'
miRNA:   3'- agACCA--CGUGCGGCCa-------------GGUGG-CCGGU- -5'
1596 3' -62.3 NC_001347.2 + 151348 0.67 0.651205
Target:  5'- cUCUGGUGgCGCGUgGGcCCAgcCUGGCgCAc -3'
miRNA:   3'- -AGACCAC-GUGCGgCCaGGU--GGCCG-GU- -5'
1596 3' -62.3 NC_001347.2 + 158675 0.67 0.651205
Target:  5'- gUCggGGcGCGCGCUGGUuaaacagaCCGCCuGCCAc -3'
miRNA:   3'- -AGa-CCaCGUGCGGCCA--------GGUGGcCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.