miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1596 3' -62.3 NC_001347.2 + 7012 0.66 0.735775
Target:  5'- -----aGCACgauGCCGGUCCACCagaugauauugaGGCCGg -3'
miRNA:   3'- agaccaCGUG---CGGCCAGGUGG------------CCGGU- -5'
1596 3' -62.3 NC_001347.2 + 14207 0.69 0.574919
Target:  5'- uUCUGucaGUG-ACGCCGGUUguCCGGCUg -3'
miRNA:   3'- -AGAC---CACgUGCGGCCAGguGGCCGGu -5'
1596 3' -62.3 NC_001347.2 + 17017 0.66 0.744877
Target:  5'- aUUUGGcagGCGCGCgUGGUCCG-CGGCg- -3'
miRNA:   3'- -AGACCa--CGUGCG-GCCAGGUgGCCGgu -5'
1596 3' -62.3 NC_001347.2 + 17333 0.68 0.62252
Target:  5'- --cGGUugccGCGCGUaUGG-CCGCCGGCCAc -3'
miRNA:   3'- agaCCA----CGUGCG-GCCaGGUGGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 18397 0.7 0.490964
Target:  5'- cCUGGUcauccGCACGCCgGGUCgCACCGagguggaGCCGu -3'
miRNA:   3'- aGACCA-----CGUGCGG-CCAG-GUGGC-------CGGU- -5'
1596 3' -62.3 NC_001347.2 + 21412 0.66 0.744877
Target:  5'- gCUGGUGgcuCAUGCCG--CCACCGGUg- -3'
miRNA:   3'- aGACCAC---GUGCGGCcaGGUGGCCGgu -5'
1596 3' -62.3 NC_001347.2 + 24634 0.68 0.632084
Target:  5'- gCUGGUGCuauuacuCGCCGG-CCucCUGGCgCAc -3'
miRNA:   3'- aGACCACGu------GCGGCCaGGu-GGCCG-GU- -5'
1596 3' -62.3 NC_001347.2 + 25625 0.67 0.651205
Target:  5'- cCUGGacgGUACGuuGGUCaucUCGGCCGc -3'
miRNA:   3'- aGACCa--CGUGCggCCAGgu-GGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 26871 0.68 0.63591
Target:  5'- -gUGGUcgGCACGCUGGgaccaaauguucagCUACCuGGCCAa -3'
miRNA:   3'- agACCA--CGUGCGGCCa-------------GGUGG-CCGGU- -5'
1596 3' -62.3 NC_001347.2 + 41222 0.69 0.563601
Target:  5'- gCUGGUGCAUGUgGGgacgcuucggaaCCAUgGGCCGc -3'
miRNA:   3'- aGACCACGUGCGgCCa-----------GGUGgCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 73572 0.69 0.584391
Target:  5'- -aUGG-GCGCGCacgCGGacaaagacCCACCGGCCAc -3'
miRNA:   3'- agACCaCGUGCG---GCCa-------GGUGGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 76961 0.66 0.735775
Target:  5'- cCUGGaUGCuggaagucuUGCCGGcgcCCGCCGuGCCGg -3'
miRNA:   3'- aGACC-ACGu--------GCGGCCa--GGUGGC-CGGU- -5'
1596 3' -62.3 NC_001347.2 + 77045 0.69 0.556089
Target:  5'- --aGG-GCACGCgCGuG-CCGCCGGCCu -3'
miRNA:   3'- agaCCaCGUGCG-GC-CaGGUGGCCGGu -5'
1596 3' -62.3 NC_001347.2 + 78937 0.66 0.735775
Target:  5'- gCUGG-GCACGCUGGaCCccguACCcgaGGCCu -3'
miRNA:   3'- aGACCaCGUGCGGCCaGG----UGG---CCGGu -5'
1596 3' -62.3 NC_001347.2 + 87494 0.66 0.735775
Target:  5'- gCUGucgaUGCACGCCaGcuUCCACUGGUCGu -3'
miRNA:   3'- aGACc---ACGUGCGGcC--AGGUGGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 87606 0.66 0.708025
Target:  5'- --cGGUGCACGCCcGUgcCCACCaGCg- -3'
miRNA:   3'- agaCCACGUGCGGcCA--GGUGGcCGgu -5'
1596 3' -62.3 NC_001347.2 + 88535 0.71 0.465379
Target:  5'- -gUGGUG-ACGCCG--CCGCCGGCCu -3'
miRNA:   3'- agACCACgUGCGGCcaGGUGGCCGGu -5'
1596 3' -62.3 NC_001347.2 + 97575 0.66 0.735775
Target:  5'- -----aGCACGCUGGUaC-CCGGCCAa -3'
miRNA:   3'- agaccaCGUGCGGCCAgGuGGCCGGU- -5'
1596 3' -62.3 NC_001347.2 + 126611 0.66 0.735775
Target:  5'- gUCUGcGUGCACuaC-GUCUACCuGGCCu -3'
miRNA:   3'- -AGAC-CACGUGcgGcCAGGUGG-CCGGu -5'
1596 3' -62.3 NC_001347.2 + 126879 0.69 0.574919
Target:  5'- cUUGGgGCugGCCGG-CUACggCGGCCGc -3'
miRNA:   3'- aGACCaCGugCGGCCaGGUG--GCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.