miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1596 5' -55.7 NC_001347.2 + 58858 0.66 0.960618
Target:  5'- cCCUu-CCAcCGGCAGCGGcacGCcGGAGUg -3'
miRNA:   3'- -GGAcuGGUuGCCGUCGCU---CGaCCUUA- -5'
1596 5' -55.7 NC_001347.2 + 196527 0.66 0.960618
Target:  5'- gCUGAUCGACGacuacuuucuGCuccccGCGGGCUGGGc- -3'
miRNA:   3'- gGACUGGUUGC----------CGu----CGCUCGACCUua -5'
1596 5' -55.7 NC_001347.2 + 106393 0.66 0.949185
Target:  5'- uCCUGAa-AACGcCGGaCGAGCUGGAc- -3'
miRNA:   3'- -GGACUggUUGCcGUC-GCUCGACCUua -5'
1596 5' -55.7 NC_001347.2 + 153317 0.66 0.939525
Target:  5'- gCUGGCCAGCucgcguuGGCGGCgcuugcgGAGCaGGGAg -3'
miRNA:   3'- gGACUGGUUG-------CCGUCG-------CUCGaCCUUa -5'
1596 5' -55.7 NC_001347.2 + 139322 0.67 0.935738
Target:  5'- aUCUGGCgGcguugugcGCGGCGGUGGGCUGu--- -3'
miRNA:   3'- -GGACUGgU--------UGCCGUCGCUCGACcuua -5'
1596 5' -55.7 NC_001347.2 + 67632 0.67 0.935738
Target:  5'- aCgUGuCCAGCGGCAGCGAcaugcggccGCUGc--- -3'
miRNA:   3'- -GgACuGGUUGCCGUCGCU---------CGACcuua -5'
1596 5' -55.7 NC_001347.2 + 138734 0.67 0.931301
Target:  5'- aCCUGACCGuaGCGGuUAGCuuuucuuacgaauuGCUGGGAUc -3'
miRNA:   3'- -GGACUGGU--UGCC-GUCGcu------------CGACCUUA- -5'
1596 5' -55.7 NC_001347.2 + 90614 0.67 0.925624
Target:  5'- cCCggaGACCuGACGGCAGuUGAGggGGAGg -3'
miRNA:   3'- -GGa--CUGG-UUGCCGUC-GCUCgaCCUUa -5'
1596 5' -55.7 NC_001347.2 + 1885 0.67 0.920221
Target:  5'- aCCUGaACCAGCGucugugcuGCGGCuGGCUGGc-- -3'
miRNA:   3'- -GGAC-UGGUUGC--------CGUCGcUCGACCuua -5'
1596 5' -55.7 NC_001347.2 + 182442 0.67 0.919113
Target:  5'- aCCUGGCaGACGGCAGCGAaacagaauucGGAGa -3'
miRNA:   3'- -GGACUGgUUGCCGUCGCUcga-------CCUUa -5'
1596 5' -55.7 NC_001347.2 + 108439 0.67 0.918555
Target:  5'- --gGugCAGCacacguacuuuacgGGCAGCGAGgUGGAGa -3'
miRNA:   3'- ggaCugGUUG--------------CCGUCGCUCgACCUUa -5'
1596 5' -55.7 NC_001347.2 + 65835 0.68 0.902632
Target:  5'- gCCagGACCcguacugcGACGGCAGCGccagcGGCUGGc-- -3'
miRNA:   3'- -GGa-CUGG--------UUGCCGUCGC-----UCGACCuua -5'
1596 5' -55.7 NC_001347.2 + 168262 0.68 0.896314
Target:  5'- cCCggcgGACCAGCGGCuGCuGGCccccGGAAc -3'
miRNA:   3'- -GGa---CUGGUUGCCGuCGcUCGa---CCUUa -5'
1596 5' -55.7 NC_001347.2 + 113088 0.68 0.889774
Target:  5'- uCCgcggGAagAACGGaCGGCGAcGCUGGAAg -3'
miRNA:   3'- -GGa---CUggUUGCC-GUCGCU-CGACCUUa -5'
1596 5' -55.7 NC_001347.2 + 180265 0.68 0.889774
Target:  5'- gUCUG-UCGACcGCAGCGguGGCUGGAGa -3'
miRNA:   3'- -GGACuGGUUGcCGUCGC--UCGACCUUa -5'
1596 5' -55.7 NC_001347.2 + 44035 0.68 0.889108
Target:  5'- -gUGG-CGACGGCAGCGGugguggcGCUGGGGg -3'
miRNA:   3'- ggACUgGUUGCCGUCGCU-------CGACCUUa -5'
1596 5' -55.7 NC_001347.2 + 63076 0.68 0.883015
Target:  5'- aCUG-CCGGCGGguGUGGGCUcGGcAAg -3'
miRNA:   3'- gGACuGGUUGCCguCGCUCGA-CC-UUa -5'
1596 5' -55.7 NC_001347.2 + 63807 0.68 0.882327
Target:  5'- gCCUGcCCAccucaugaagcgGCGGCGGCGAuggcgggGCUGGu-- -3'
miRNA:   3'- -GGACuGGU------------UGCCGUCGCU-------CGACCuua -5'
1596 5' -55.7 NC_001347.2 + 192032 0.69 0.868855
Target:  5'- gCUGACgAGCGGCAGCG-GCgacGAc- -3'
miRNA:   3'- gGACUGgUUGCCGUCGCuCGac-CUua -5'
1596 5' -55.7 NC_001347.2 + 79228 0.69 0.846088
Target:  5'- cCCUGAUgAuCcGCGGCGuGCUGGAGg -3'
miRNA:   3'- -GGACUGgUuGcCGUCGCuCGACCUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.