Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1596 | 5' | -55.7 | NC_001347.2 | + | 106393 | 0.66 | 0.949185 |
Target: 5'- uCCUGAa-AACGcCGGaCGAGCUGGAc- -3' miRNA: 3'- -GGACUggUUGCcGUC-GCUCGACCUua -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 58858 | 0.66 | 0.960618 |
Target: 5'- cCCUu-CCAcCGGCAGCGGcacGCcGGAGUg -3' miRNA: 3'- -GGAcuGGUuGCCGUCGCU---CGaCCUUA- -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 196527 | 0.66 | 0.960618 |
Target: 5'- gCUGAUCGACGacuacuuucuGCuccccGCGGGCUGGGc- -3' miRNA: 3'- gGACUGGUUGC----------CGu----CGCUCGACCUua -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 153317 | 0.66 | 0.939525 |
Target: 5'- gCUGGCCAGCucgcguuGGCGGCgcuugcgGAGCaGGGAg -3' miRNA: 3'- gGACUGGUUG-------CCGUCG-------CUCGaCCUUa -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 108439 | 0.67 | 0.918555 |
Target: 5'- --gGugCAGCacacguacuuuacgGGCAGCGAGgUGGAGa -3' miRNA: 3'- ggaCugGUUG--------------CCGUCGCUCgACCUUa -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 1885 | 0.67 | 0.920221 |
Target: 5'- aCCUGaACCAGCGucugugcuGCGGCuGGCUGGc-- -3' miRNA: 3'- -GGAC-UGGUUGC--------CGUCGcUCGACCuua -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 182442 | 0.67 | 0.919113 |
Target: 5'- aCCUGGCaGACGGCAGCGAaacagaauucGGAGa -3' miRNA: 3'- -GGACUGgUUGCCGUCGCUcga-------CCUUa -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 90614 | 0.67 | 0.925624 |
Target: 5'- cCCggaGACCuGACGGCAGuUGAGggGGAGg -3' miRNA: 3'- -GGa--CUGG-UUGCCGUC-GCUCgaCCUUa -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 67632 | 0.67 | 0.935738 |
Target: 5'- aCgUGuCCAGCGGCAGCGAcaugcggccGCUGc--- -3' miRNA: 3'- -GgACuGGUUGCCGUCGCU---------CGACcuua -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 138734 | 0.67 | 0.931301 |
Target: 5'- aCCUGACCGuaGCGGuUAGCuuuucuuacgaauuGCUGGGAUc -3' miRNA: 3'- -GGACUGGU--UGCC-GUCGcu------------CGACCUUA- -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 139322 | 0.67 | 0.935738 |
Target: 5'- aUCUGGCgGcguugugcGCGGCGGUGGGCUGu--- -3' miRNA: 3'- -GGACUGgU--------UGCCGUCGCUCGACcuua -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 63807 | 0.68 | 0.882327 |
Target: 5'- gCCUGcCCAccucaugaagcgGCGGCGGCGAuggcgggGCUGGu-- -3' miRNA: 3'- -GGACuGGU------------UGCCGUCGCU-------CGACCuua -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 63076 | 0.68 | 0.883015 |
Target: 5'- aCUG-CCGGCGGguGUGGGCUcGGcAAg -3' miRNA: 3'- gGACuGGUUGCCguCGCUCGA-CC-UUa -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 180265 | 0.68 | 0.889774 |
Target: 5'- gUCUG-UCGACcGCAGCGguGGCUGGAGa -3' miRNA: 3'- -GGACuGGUUGcCGUCGC--UCGACCUUa -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 44035 | 0.68 | 0.889108 |
Target: 5'- -gUGG-CGACGGCAGCGGugguggcGCUGGGGg -3' miRNA: 3'- ggACUgGUUGCCGUCGCU-------CGACCUUa -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 113088 | 0.68 | 0.889774 |
Target: 5'- uCCgcggGAagAACGGaCGGCGAcGCUGGAAg -3' miRNA: 3'- -GGa---CUggUUGCC-GUCGCU-CGACCUUa -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 65835 | 0.68 | 0.902632 |
Target: 5'- gCCagGACCcguacugcGACGGCAGCGccagcGGCUGGc-- -3' miRNA: 3'- -GGa-CUGG--------UUGCCGUCGC-----UCGACCuua -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 168262 | 0.68 | 0.896314 |
Target: 5'- cCCggcgGACCAGCGGCuGCuGGCccccGGAAc -3' miRNA: 3'- -GGa---CUGGUUGCCGuCGcUCGa---CCUUa -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 66511 | 0.69 | 0.837308 |
Target: 5'- --cGAUCGagGCGGCGGCGAucgcagccuccucGCUGGGAUc -3' miRNA: 3'- ggaCUGGU--UGCCGUCGCU-------------CGACCUUA- -5' |
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1596 | 5' | -55.7 | NC_001347.2 | + | 79228 | 0.69 | 0.846088 |
Target: 5'- cCCUGAUgAuCcGCGGCGuGCUGGAGg -3' miRNA: 3'- -GGACUGgUuGcCGUCGCuCGACCUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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