miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1596 5' -55.7 NC_001347.2 + 173252 1.07 0.006131
Target:  5'- uCCUGACCAACGGCAGCGAGCUGGAAUu -3'
miRNA:   3'- -GGACUGGUUGCCGUCGCUCGACCUUA- -5'
1596 5' -55.7 NC_001347.2 + 47143 0.77 0.420943
Target:  5'- -aUGGCC-GCGGCAGCGGGgaGGAGa -3'
miRNA:   3'- ggACUGGuUGCCGUCGCUCgaCCUUa -5'
1596 5' -55.7 NC_001347.2 + 197567 0.76 0.4934
Target:  5'- --cGGCCGACGGCAGCGuGCUGu--- -3'
miRNA:   3'- ggaCUGGUUGCCGUCGCuCGACcuua -5'
1596 5' -55.7 NC_001347.2 + 2402 0.71 0.730526
Target:  5'- gCCgaGGCCGcGCGGCGGCugcugcccGAGCUGGAc- -3'
miRNA:   3'- -GGa-CUGGU-UGCCGUCG--------CUCGACCUua -5'
1596 5' -55.7 NC_001347.2 + 142997 0.7 0.804485
Target:  5'- ---aGCCGGCGGCGGCGGuGgUGGAGg -3'
miRNA:   3'- ggacUGGUUGCCGUCGCU-CgACCUUa -5'
1596 5' -55.7 NC_001347.2 + 177826 0.7 0.821633
Target:  5'- uCCUGuGgCAACGGCGGCaacGAGCUcGGAu- -3'
miRNA:   3'- -GGAC-UgGUUGCCGUCG---CUCGA-CCUua -5'
1596 5' -55.7 NC_001347.2 + 173809 0.7 0.821633
Target:  5'- aCCUGAcguCCAaagguggaucggGCGGCGGCGgAGgaGGAGg -3'
miRNA:   3'- -GGACU---GGU------------UGCCGUCGC-UCgaCCUUa -5'
1596 5' -55.7 NC_001347.2 + 174212 0.7 0.821633
Target:  5'- aCUGGCCgGACGGCAGCGucacagagGGCguucGGAc- -3'
miRNA:   3'- gGACUGG-UUGCCGUCGC--------UCGa---CCUua -5'
1596 5' -55.7 NC_001347.2 + 82512 0.7 0.829961
Target:  5'- gCCgaGGCCAGC-GCAGCGuAGCUGGc-- -3'
miRNA:   3'- -GGa-CUGGUUGcCGUCGC-UCGACCuua -5'
1596 5' -55.7 NC_001347.2 + 130426 0.7 0.829961
Target:  5'- aCUG-CCGGCGGacaaCAGCGGGgaGGAGa -3'
miRNA:   3'- gGACuGGUUGCC----GUCGCUCgaCCUUa -5'
1596 5' -55.7 NC_001347.2 + 66511 0.69 0.837308
Target:  5'- --cGAUCGagGCGGCGGCGAucgcagccuccucGCUGGGAUc -3'
miRNA:   3'- ggaCUGGU--UGCCGUCGCU-------------CGACCUUA- -5'
1596 5' -55.7 NC_001347.2 + 79228 0.69 0.846088
Target:  5'- cCCUGAUgAuCcGCGGCGuGCUGGAGg -3'
miRNA:   3'- -GGACUGgUuGcCGUCGCuCGACCUUa -5'
1596 5' -55.7 NC_001347.2 + 192032 0.69 0.868855
Target:  5'- gCUGACgAGCGGCAGCG-GCgacGAc- -3'
miRNA:   3'- gGACUGgUUGCCGUCGCuCGac-CUua -5'
1596 5' -55.7 NC_001347.2 + 63807 0.68 0.882327
Target:  5'- gCCUGcCCAccucaugaagcgGCGGCGGCGAuggcgggGCUGGu-- -3'
miRNA:   3'- -GGACuGGU------------UGCCGUCGCU-------CGACCuua -5'
1596 5' -55.7 NC_001347.2 + 63076 0.68 0.883015
Target:  5'- aCUG-CCGGCGGguGUGGGCUcGGcAAg -3'
miRNA:   3'- gGACuGGUUGCCguCGCUCGA-CC-UUa -5'
1596 5' -55.7 NC_001347.2 + 44035 0.68 0.889108
Target:  5'- -gUGG-CGACGGCAGCGGugguggcGCUGGGGg -3'
miRNA:   3'- ggACUgGUUGCCGUCGCU-------CGACCUUa -5'
1596 5' -55.7 NC_001347.2 + 113088 0.68 0.889774
Target:  5'- uCCgcggGAagAACGGaCGGCGAcGCUGGAAg -3'
miRNA:   3'- -GGa---CUggUUGCC-GUCGCU-CGACCUUa -5'
1596 5' -55.7 NC_001347.2 + 180265 0.68 0.889774
Target:  5'- gUCUG-UCGACcGCAGCGguGGCUGGAGa -3'
miRNA:   3'- -GGACuGGUUGcCGUCGC--UCGACCUUa -5'
1596 5' -55.7 NC_001347.2 + 168262 0.68 0.896314
Target:  5'- cCCggcgGACCAGCGGCuGCuGGCccccGGAAc -3'
miRNA:   3'- -GGa---CUGGUUGCCGuCGcUCGa---CCUUa -5'
1596 5' -55.7 NC_001347.2 + 65835 0.68 0.902632
Target:  5'- gCCagGACCcguacugcGACGGCAGCGccagcGGCUGGc-- -3'
miRNA:   3'- -GGa-CUGG--------UUGCCGUCGC-----UCGACCuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.