miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1596 5' -55.7 NC_001347.2 + 66511 0.69 0.837308
Target:  5'- --cGAUCGagGCGGCGGCGAucgcagccuccucGCUGGGAUc -3'
miRNA:   3'- ggaCUGGU--UGCCGUCGCU-------------CGACCUUA- -5'
1596 5' -55.7 NC_001347.2 + 130426 0.7 0.829961
Target:  5'- aCUG-CCGGCGGacaaCAGCGGGgaGGAGa -3'
miRNA:   3'- gGACuGGUUGCC----GUCGCUCgaCCUUa -5'
1596 5' -55.7 NC_001347.2 + 82512 0.7 0.829961
Target:  5'- gCCgaGGCCAGC-GCAGCGuAGCUGGc-- -3'
miRNA:   3'- -GGa-CUGGUUGcCGUCGC-UCGACCuua -5'
1596 5' -55.7 NC_001347.2 + 173809 0.7 0.821633
Target:  5'- aCCUGAcguCCAaagguggaucggGCGGCGGCGgAGgaGGAGg -3'
miRNA:   3'- -GGACU---GGU------------UGCCGUCGC-UCgaCCUUa -5'
1596 5' -55.7 NC_001347.2 + 174212 0.7 0.821633
Target:  5'- aCUGGCCgGACGGCAGCGucacagagGGCguucGGAc- -3'
miRNA:   3'- gGACUGG-UUGCCGUCGC--------UCGa---CCUua -5'
1596 5' -55.7 NC_001347.2 + 177826 0.7 0.821633
Target:  5'- uCCUGuGgCAACGGCGGCaacGAGCUcGGAu- -3'
miRNA:   3'- -GGAC-UgGUUGCCGUCG---CUCGA-CCUua -5'
1596 5' -55.7 NC_001347.2 + 142997 0.7 0.804485
Target:  5'- ---aGCCGGCGGCGGCGGuGgUGGAGg -3'
miRNA:   3'- ggacUGGUUGCCGUCGCU-CgACCUUa -5'
1596 5' -55.7 NC_001347.2 + 2402 0.71 0.730526
Target:  5'- gCCgaGGCCGcGCGGCGGCugcugcccGAGCUGGAc- -3'
miRNA:   3'- -GGa-CUGGU-UGCCGUCG--------CUCGACCUua -5'
1596 5' -55.7 NC_001347.2 + 197567 0.76 0.4934
Target:  5'- --cGGCCGACGGCAGCGuGCUGu--- -3'
miRNA:   3'- ggaCUGGUUGCCGUCGCuCGACcuua -5'
1596 5' -55.7 NC_001347.2 + 47143 0.77 0.420943
Target:  5'- -aUGGCC-GCGGCAGCGGGgaGGAGa -3'
miRNA:   3'- ggACUGGuUGCCGUCGCUCgaCCUUa -5'
1596 5' -55.7 NC_001347.2 + 173252 1.07 0.006131
Target:  5'- uCCUGACCAACGGCAGCGAGCUGGAAUu -3'
miRNA:   3'- -GGACUGGUUGCCGUCGCUCGACCUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.