miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15961 3' -53.2 NC_004065.1 + 24516 0.66 0.992461
Target:  5'- cGCCGGccccaAGAUGGCGgCGgcagCGACGa -3'
miRNA:   3'- cUGGUCua---UCUACCGCaGCa---GCUGCa -5'
15961 3' -53.2 NC_004065.1 + 48487 0.66 0.992461
Target:  5'- cGCCGcGAUAGAgcaucaucugGGCGUCGaugcCGGCGa -3'
miRNA:   3'- cUGGU-CUAUCUa---------CCGCAGCa---GCUGCa -5'
15961 3' -53.2 NC_004065.1 + 113904 0.66 0.991393
Target:  5'- cGCCGGAcgAGAgGGCGgagaucgcgcgUGUCGACGa -3'
miRNA:   3'- cUGGUCUa-UCUaCCGCa----------GCAGCUGCa -5'
15961 3' -53.2 NC_004065.1 + 18476 0.66 0.991393
Target:  5'- gGGCCAGAagaAGGUaccaacgacggGGCGUCGUCGcCa- -3'
miRNA:   3'- -CUGGUCUa--UCUA-----------CCGCAGCAGCuGca -5'
15961 3' -53.2 NC_004065.1 + 44653 0.66 0.991393
Target:  5'- cGCUucgaAGAc-GAcGGCGUCGUCGGCGa -3'
miRNA:   3'- cUGG----UCUauCUaCCGCAGCAGCUGCa -5'
15961 3' -53.2 NC_004065.1 + 29819 0.66 0.99128
Target:  5'- cGGCCAGGUcguccggAGAUuccgaGGCGUCGUucCGACc- -3'
miRNA:   3'- -CUGGUCUA-------UCUA-----CCGCAGCA--GCUGca -5'
15961 3' -53.2 NC_004065.1 + 59965 0.66 0.988901
Target:  5'- cGCCAGGUuGgcGGCuUCGUCGGCc- -3'
miRNA:   3'- cUGGUCUAuCuaCCGcAGCAGCUGca -5'
15961 3' -53.2 NC_004065.1 + 14171 0.67 0.985881
Target:  5'- uGACUucguccuugGGAUGGAagGGCGUCGU-GACGc -3'
miRNA:   3'- -CUGG---------UCUAUCUa-CCGCAGCAgCUGCa -5'
15961 3' -53.2 NC_004065.1 + 90570 0.67 0.984153
Target:  5'- aACCuGAUGGucuucuUGGCGUCGUUcagGAUGUc -3'
miRNA:   3'- cUGGuCUAUCu-----ACCGCAGCAG---CUGCA- -5'
15961 3' -53.2 NC_004065.1 + 33632 0.67 0.984153
Target:  5'- cGugCAGGUcGAUGaGC-UCGUUGACGa -3'
miRNA:   3'- -CugGUCUAuCUAC-CGcAGCAGCUGCa -5'
15961 3' -53.2 NC_004065.1 + 107715 0.67 0.984153
Target:  5'- cGACCGuGUGGAUGuuCGUCGcgUCGACGa -3'
miRNA:   3'- -CUGGUcUAUCUACc-GCAGC--AGCUGCa -5'
15961 3' -53.2 NC_004065.1 + 178138 0.67 0.980221
Target:  5'- aGCCGGc--GAUGGCGgUGUCGACa- -3'
miRNA:   3'- cUGGUCuauCUACCGCaGCAGCUGca -5'
15961 3' -53.2 NC_004065.1 + 187387 0.67 0.980007
Target:  5'- uGCCAGcUGGcgcgcggcgcgguGUGGCGUCGagGGCGa -3'
miRNA:   3'- cUGGUCuAUC-------------UACCGCAGCagCUGCa -5'
15961 3' -53.2 NC_004065.1 + 139384 0.67 0.978002
Target:  5'- cGACgCGGucuGAUGGgGUCG-CGACGg -3'
miRNA:   3'- -CUG-GUCuauCUACCgCAGCaGCUGCa -5'
15961 3' -53.2 NC_004065.1 + 208011 0.67 0.978002
Target:  5'- uGGCCGGGUuaguGccGGCGgcgaugacCGUCGGCGUg -3'
miRNA:   3'- -CUGGUCUAu---CuaCCGCa-------GCAGCUGCA- -5'
15961 3' -53.2 NC_004065.1 + 200843 0.68 0.975605
Target:  5'- cGACCcGGUGGAguucGGCGUCGaCGGgGg -3'
miRNA:   3'- -CUGGuCUAUCUa---CCGCAGCaGCUgCa -5'
15961 3' -53.2 NC_004065.1 + 81967 0.68 0.975605
Target:  5'- aGAUCuGGAU-GAUGaUGUCGUCGACGUu -3'
miRNA:   3'- -CUGG-UCUAuCUACcGCAGCAGCUGCA- -5'
15961 3' -53.2 NC_004065.1 + 174654 0.68 0.973022
Target:  5'- uGCCGGA-GGAcUGGgGUCGUCGcCGg -3'
miRNA:   3'- cUGGUCUaUCU-ACCgCAGCAGCuGCa -5'
15961 3' -53.2 NC_004065.1 + 140149 0.68 0.967273
Target:  5'- gGGCCGac--GAUGGCGcCGUCGACa- -3'
miRNA:   3'- -CUGGUcuauCUACCGCaGCAGCUGca -5'
15961 3' -53.2 NC_004065.1 + 116296 0.68 0.967273
Target:  5'- cGCCGGAguucuccgAGGUgucGGCGUCGgCGGCGg -3'
miRNA:   3'- cUGGUCUa-------UCUA---CCGCAGCaGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.