miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15961 5' -57.1 NC_004065.1 + 161481 0.66 0.947509
Target:  5'- -----gGGACGcCGUCaCCUCCgcCGCCGc -3'
miRNA:   3'- ucuacaUCUGC-GCAG-GGAGGa-GCGGC- -5'
15961 5' -57.1 NC_004065.1 + 58563 0.66 0.946678
Target:  5'- cGGAUGUucGGCGCGaUCCagcggaugagCUCGCCGa -3'
miRNA:   3'- -UCUACAu-CUGCGC-AGGgag-------GAGCGGC- -5'
15961 5' -57.1 NC_004065.1 + 138298 0.66 0.943269
Target:  5'- gGGAggccGUGGACGCGgCCCUgaUCGCg- -3'
miRNA:   3'- -UCUa---CAUCUGCGCaGGGAggAGCGgc -5'
15961 5' -57.1 NC_004065.1 + 152455 0.66 0.938813
Target:  5'- cAGAUGUAGaagagcacccGCGCGaacgagCCCUCggucgcgCGCCGg -3'
miRNA:   3'- -UCUACAUC----------UGCGCa-----GGGAGga-----GCGGC- -5'
15961 5' -57.1 NC_004065.1 + 126486 0.66 0.938813
Target:  5'- cGAUGUuGGCGCGcugcaCCCgCgUCGCCa -3'
miRNA:   3'- uCUACAuCUGCGCa----GGGaGgAGCGGc -5'
15961 5' -57.1 NC_004065.1 + 120989 0.66 0.938813
Target:  5'- ----cUAGcuGCGCGUCguCCUCCUCGCgGa -3'
miRNA:   3'- ucuacAUC--UGCGCAG--GGAGGAGCGgC- -5'
15961 5' -57.1 NC_004065.1 + 81922 0.66 0.934137
Target:  5'- ---cGUAGGCGUGgugcaccaUCUCUCCgaCGCCGa -3'
miRNA:   3'- ucuaCAUCUGCGC--------AGGGAGGa-GCGGC- -5'
15961 5' -57.1 NC_004065.1 + 102526 0.66 0.934137
Target:  5'- cAGAggacGACGCGcgCCUugUCCUCGUCGg -3'
miRNA:   3'- -UCUacauCUGCGCa-GGG--AGGAGCGGC- -5'
15961 5' -57.1 NC_004065.1 + 7373 0.66 0.933658
Target:  5'- cGGAcGUGgggcgcuGACGCGggCCCUCCUCGgUa -3'
miRNA:   3'- -UCUaCAU-------CUGCGCa-GGGAGGAGCgGc -5'
15961 5' -57.1 NC_004065.1 + 25464 0.66 0.924127
Target:  5'- gAGAgc-AGACGCGcagCaCCUCC-CGCCGc -3'
miRNA:   3'- -UCUacaUCUGCGCa--G-GGAGGaGCGGC- -5'
15961 5' -57.1 NC_004065.1 + 55610 0.67 0.918791
Target:  5'- ---cGU-GAcCGCGUCCCUCC-CGCUc -3'
miRNA:   3'- ucuaCAuCU-GCGCAGGGAGGaGCGGc -5'
15961 5' -57.1 NC_004065.1 + 76938 0.67 0.918791
Target:  5'- cGGAgGgccAGACGcCGUCCUccuccucaUCCUCGUCGa -3'
miRNA:   3'- -UCUaCa--UCUGC-GCAGGG--------AGGAGCGGC- -5'
15961 5' -57.1 NC_004065.1 + 25416 0.67 0.913236
Target:  5'- -cAUGcAGACGCcccgaagaGUCCCUCUUgCGCCa -3'
miRNA:   3'- ucUACaUCUGCG--------CAGGGAGGA-GCGGc -5'
15961 5' -57.1 NC_004065.1 + 12638 0.67 0.913236
Target:  5'- gAGAUGaUAGGcCGCuccuaUCCCcgcUCCUCGCUGa -3'
miRNA:   3'- -UCUAC-AUCU-GCGc----AGGG---AGGAGCGGC- -5'
15961 5' -57.1 NC_004065.1 + 133733 0.67 0.901471
Target:  5'- -cGUGUGGACgGCGUCCgUgacgccCCUgGCCGc -3'
miRNA:   3'- ucUACAUCUG-CGCAGGgA------GGAgCGGC- -5'
15961 5' -57.1 NC_004065.1 + 173969 0.67 0.900247
Target:  5'- gGGGUGguccacgaccugGGGCGCGaaCCCUCCgagGCCGa -3'
miRNA:   3'- -UCUACa-----------UCUGCGCa-GGGAGGag-CGGC- -5'
15961 5' -57.1 NC_004065.1 + 55428 0.67 0.888849
Target:  5'- ---gGUGGugGCGUgCUUCCuagcgggggUCGCCGc -3'
miRNA:   3'- ucuaCAUCugCGCAgGGAGG---------AGCGGC- -5'
15961 5' -57.1 NC_004065.1 + 108769 0.68 0.882223
Target:  5'- gGGA-GUAu-CGCGUCUCUCCUcCGUCGu -3'
miRNA:   3'- -UCUaCAUcuGCGCAGGGAGGA-GCGGC- -5'
15961 5' -57.1 NC_004065.1 + 27953 0.68 0.875393
Target:  5'- uGGUGcAGcACaCGUCCCUguaCCUCGCCa -3'
miRNA:   3'- uCUACaUC-UGcGCAGGGA---GGAGCGGc -5'
15961 5' -57.1 NC_004065.1 + 145270 0.68 0.868362
Target:  5'- uAGAg--AGAC-CGUCCgagCCUCGCCGa -3'
miRNA:   3'- -UCUacaUCUGcGCAGGga-GGAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.