miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15963 3' -56.9 NC_004065.1 + 101444 0.66 0.937308
Target:  5'- gGAUGCGCCUucgccgccgacGUCGcUGCCGcUGCGGg -3'
miRNA:   3'- -UUACGUGGA-----------CAGCaGUGGCaGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 220283 0.66 0.932492
Target:  5'- aGAUGCGCCUGUacaGgUACC-UgGCGGUg -3'
miRNA:   3'- -UUACGUGGACAg--CaGUGGcAgCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 150573 0.66 0.916685
Target:  5'- --aGUACCUGUCGUCcGCCG-CGUa-- -3'
miRNA:   3'- uuaCGUGGACAGCAG-UGGCaGCGcca -5'
15963 3' -56.9 NC_004065.1 + 151697 0.66 0.916685
Target:  5'- --gGCGcCCUGcaUCGUCugCGUCG-GGUc -3'
miRNA:   3'- uuaCGU-GGAC--AGCAGugGCAGCgCCA- -5'
15963 3' -56.9 NC_004065.1 + 189385 0.66 0.916685
Target:  5'- --cGUGCCguucggCGUCACCGUCGCcgaGGa -3'
miRNA:   3'- uuaCGUGGaca---GCAGUGGCAGCG---CCa -5'
15963 3' -56.9 NC_004065.1 + 199224 0.66 0.915559
Target:  5'- cGAUGUACCguccguccgucaGUCGUCAUCGUCgGCGu- -3'
miRNA:   3'- -UUACGUGGa-----------CAGCAGUGGCAG-CGCca -5'
15963 3' -56.9 NC_004065.1 + 51493 0.66 0.910964
Target:  5'- aGAUGUAgaacaugacuccCCUGUCGUaggccaugacgaCGCCGUCGCGu- -3'
miRNA:   3'- -UUACGU------------GGACAGCA------------GUGGCAGCGCca -5'
15963 3' -56.9 NC_004065.1 + 130637 0.67 0.907424
Target:  5'- --cGCACCUGUCGcucgagucgggacagUCggcGCCGUCGCu-- -3'
miRNA:   3'- uuaCGUGGACAGC---------------AG---UGGCAGCGcca -5'
15963 3' -56.9 NC_004065.1 + 111169 0.67 0.905019
Target:  5'- -cUGCGCUUcgUGUCGCgGUCGUGGa -3'
miRNA:   3'- uuACGUGGAcaGCAGUGgCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 195431 0.67 0.898852
Target:  5'- ---cCGCCg--CGUCGCCGUCGuCGGa -3'
miRNA:   3'- uuacGUGGacaGCAGUGGCAGC-GCCa -5'
15963 3' -56.9 NC_004065.1 + 160900 0.67 0.885862
Target:  5'- --aGCACCuUGUCGgcgCGCCG-CGCGu- -3'
miRNA:   3'- uuaCGUGG-ACAGCa--GUGGCaGCGCca -5'
15963 3' -56.9 NC_004065.1 + 125340 0.67 0.885862
Target:  5'- --aGCACCUGcagCGUCGCC-UCGUGa- -3'
miRNA:   3'- uuaCGUGGACa--GCAGUGGcAGCGCca -5'
15963 3' -56.9 NC_004065.1 + 30012 0.67 0.879046
Target:  5'- -cUGCGCgac-CGUCACCGgCGCGGUg -3'
miRNA:   3'- uuACGUGgacaGCAGUGGCaGCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 87183 0.68 0.872022
Target:  5'- -cUGCACCgcgcgGUCGUCGCgCGacCGCaGGUa -3'
miRNA:   3'- uuACGUGGa----CAGCAGUG-GCa-GCG-CCA- -5'
15963 3' -56.9 NC_004065.1 + 118114 0.68 0.864794
Target:  5'- --gGCGUCUcUCGUCGCCG-CGCGGa -3'
miRNA:   3'- uuaCGUGGAcAGCAGUGGCaGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 24587 0.68 0.857367
Target:  5'- --cGCGCgUGUCGUCGCCGccaccgccgcCGcCGGUg -3'
miRNA:   3'- uuaCGUGgACAGCAGUGGCa---------GC-GCCA- -5'
15963 3' -56.9 NC_004065.1 + 146544 0.68 0.856614
Target:  5'- --gGUcgGCCUGcccgacaUCGUCGgCGUCGCGGg -3'
miRNA:   3'- uuaCG--UGGAC-------AGCAGUgGCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 42882 0.68 0.849747
Target:  5'- --cGCACCUGUCGaaagagacacaUCACCG-CGCa-- -3'
miRNA:   3'- uuaCGUGGACAGC-----------AGUGGCaGCGcca -5'
15963 3' -56.9 NC_004065.1 + 41998 0.68 0.849747
Target:  5'- -uUGCGUCguguugGUCGUgucUACCGUCGCGGa -3'
miRNA:   3'- uuACGUGGa-----CAGCA---GUGGCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 116715 0.69 0.782629
Target:  5'- uGGUGCGCC-GUC-UCGCUggGUCGCGGg -3'
miRNA:   3'- -UUACGUGGaCAGcAGUGG--CAGCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.