Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15963 | 3' | -56.9 | NC_004065.1 | + | 118114 | 0.68 | 0.864794 |
Target: 5'- --gGCGUCUcUCGUCGCCG-CGCGGa -3' miRNA: 3'- uuaCGUGGAcAGCAGUGGCaGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 130637 | 0.67 | 0.907424 |
Target: 5'- --cGCACCUGUCGcucgagucgggacagUCggcGCCGUCGCu-- -3' miRNA: 3'- uuaCGUGGACAGC---------------AG---UGGCAGCGcca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 30012 | 0.67 | 0.879046 |
Target: 5'- -cUGCGCgac-CGUCACCGgCGCGGUg -3' miRNA: 3'- uuACGUGgacaGCAGUGGCaGCGCCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 125340 | 0.67 | 0.885862 |
Target: 5'- --aGCACCUGcagCGUCGCC-UCGUGa- -3' miRNA: 3'- uuaCGUGGACa--GCAGUGGcAGCGCca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 160900 | 0.67 | 0.885862 |
Target: 5'- --aGCACCuUGUCGgcgCGCCG-CGCGu- -3' miRNA: 3'- uuaCGUGG-ACAGCa--GUGGCaGCGCca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 111169 | 0.67 | 0.905019 |
Target: 5'- -cUGCGCUUcgUGUCGCgGUCGUGGa -3' miRNA: 3'- uuACGUGGAcaGCAGUGgCAGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 195431 | 0.67 | 0.898852 |
Target: 5'- ---cCGCCg--CGUCGCCGUCGuCGGa -3' miRNA: 3'- uuacGUGGacaGCAGUGGCAGC-GCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 220283 | 0.66 | 0.932492 |
Target: 5'- aGAUGCGCCUGUacaGgUACC-UgGCGGUg -3' miRNA: 3'- -UUACGUGGACAg--CaGUGGcAgCGCCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 189385 | 0.66 | 0.916685 |
Target: 5'- --cGUGCCguucggCGUCACCGUCGCcgaGGa -3' miRNA: 3'- uuaCGUGGaca---GCAGUGGCAGCG---CCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 151697 | 0.66 | 0.916685 |
Target: 5'- --gGCGcCCUGcaUCGUCugCGUCG-GGUc -3' miRNA: 3'- uuaCGU-GGAC--AGCAGugGCAGCgCCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 150573 | 0.66 | 0.916685 |
Target: 5'- --aGUACCUGUCGUCcGCCG-CGUa-- -3' miRNA: 3'- uuaCGUGGACAGCAG-UGGCaGCGcca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 199224 | 0.66 | 0.915559 |
Target: 5'- cGAUGUACCguccguccgucaGUCGUCAUCGUCgGCGu- -3' miRNA: 3'- -UUACGUGGa-----------CAGCAGUGGCAG-CGCca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 51493 | 0.66 | 0.910964 |
Target: 5'- aGAUGUAgaacaugacuccCCUGUCGUaggccaugacgaCGCCGUCGCGu- -3' miRNA: 3'- -UUACGU------------GGACAGCA------------GUGGCAGCGCca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 101444 | 0.66 | 0.937308 |
Target: 5'- gGAUGCGCCUucgccgccgacGUCGcUGCCGcUGCGGg -3' miRNA: 3'- -UUACGUGGA-----------CAGCaGUGGCaGCGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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