miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15963 3' -56.9 NC_004065.1 + 34992 0.7 0.773581
Target:  5'- --gGCACCUcgacGUCGUCGCCcGUCGuUGGc -3'
miRNA:   3'- uuaCGUGGA----CAGCAGUGG-CAGC-GCCa -5'
15963 3' -56.9 NC_004065.1 + 111929 0.7 0.755132
Target:  5'- --aGaCGCCaUGggCGcCGCCGUCGCGGUg -3'
miRNA:   3'- uuaC-GUGG-ACa-GCaGUGGCAGCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 133441 0.7 0.74575
Target:  5'- gAGUGCAgC-GUCGcCACgCGUCGCGGc -3'
miRNA:   3'- -UUACGUgGaCAGCaGUG-GCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 115524 0.7 0.74575
Target:  5'- ----aACCUGUCuGUCACCGUgaUGCGGg -3'
miRNA:   3'- uuacgUGGACAG-CAGUGGCA--GCGCCa -5'
15963 3' -56.9 NC_004065.1 + 130905 0.71 0.726709
Target:  5'- --cGCACCUG-CGUUGCCGUCaaaCGGg -3'
miRNA:   3'- uuaCGUGGACaGCAGUGGCAGc--GCCa -5'
15963 3' -56.9 NC_004065.1 + 22400 0.71 0.717069
Target:  5'- cAUGgAgCUGUCccugGUCACCGUCGUGGc -3'
miRNA:   3'- uUACgUgGACAG----CAGUGGCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 91903 0.71 0.70736
Target:  5'- cAUGCucACCgacgCGaUCGCCGUCGCGGUc -3'
miRNA:   3'- uUACG--UGGaca-GC-AGUGGCAGCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 56036 0.72 0.667011
Target:  5'- --aGCuCCUGuucgucaUCGUCGCCGUCGCGa- -3'
miRNA:   3'- uuaCGuGGAC-------AGCAGUGGCAGCGCca -5'
15963 3' -56.9 NC_004065.1 + 158294 0.73 0.588442
Target:  5'- --aGCGCCg--CGUCACCGUCGCa-- -3'
miRNA:   3'- uuaCGUGGacaGCAGUGGCAGCGcca -5'
15963 3' -56.9 NC_004065.1 + 153961 0.74 0.539458
Target:  5'- -cUGCgACUUGUCuG-CGCCGUCGCGGUc -3'
miRNA:   3'- uuACG-UGGACAG-CaGUGGCAGCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 145753 0.74 0.510728
Target:  5'- gAGUGCGCCgaucgcGUCGcgCGCCgGUCGCGGg -3'
miRNA:   3'- -UUACGUGGa-----CAGCa-GUGG-CAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 97452 0.76 0.437613
Target:  5'- --gGCGCCcgUGUCGUCGaaGUCGCGGa -3'
miRNA:   3'- uuaCGUGG--ACAGCAGUggCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 169568 0.76 0.428896
Target:  5'- -cUGCGCgCUGUUGcCGCUGUCGCGGc -3'
miRNA:   3'- uuACGUG-GACAGCaGUGGCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 30802 1.05 0.006059
Target:  5'- cAAUGCACCUGUCGUCACCGUCGCGGUg -3'
miRNA:   3'- -UUACGUGGACAGCAGUGGCAGCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.