miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15963 3' -56.9 NC_004065.1 + 130905 0.71 0.726709
Target:  5'- --cGCACCUG-CGUUGCCGUCaaaCGGg -3'
miRNA:   3'- uuaCGUGGACaGCAGUGGCAGc--GCCa -5'
15963 3' -56.9 NC_004065.1 + 133441 0.7 0.74575
Target:  5'- gAGUGCAgC-GUCGcCACgCGUCGCGGc -3'
miRNA:   3'- -UUACGUgGaCAGCaGUG-GCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 145753 0.74 0.510728
Target:  5'- gAGUGCGCCgaucgcGUCGcgCGCCgGUCGCGGg -3'
miRNA:   3'- -UUACGUGGa-----CAGCa-GUGG-CAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 146544 0.68 0.856614
Target:  5'- --gGUcgGCCUGcccgacaUCGUCGgCGUCGCGGg -3'
miRNA:   3'- uuaCG--UGGAC-------AGCAGUgGCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 150573 0.66 0.916685
Target:  5'- --aGUACCUGUCGUCcGCCG-CGUa-- -3'
miRNA:   3'- uuaCGUGGACAGCAG-UGGCaGCGcca -5'
15963 3' -56.9 NC_004065.1 + 151697 0.66 0.916685
Target:  5'- --gGCGcCCUGcaUCGUCugCGUCG-GGUc -3'
miRNA:   3'- uuaCGU-GGAC--AGCAGugGCAGCgCCA- -5'
15963 3' -56.9 NC_004065.1 + 153961 0.74 0.539458
Target:  5'- -cUGCgACUUGUCuG-CGCCGUCGCGGUc -3'
miRNA:   3'- uuACG-UGGACAG-CaGUGGCAGCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 158294 0.73 0.588442
Target:  5'- --aGCGCCg--CGUCACCGUCGCa-- -3'
miRNA:   3'- uuaCGUGGacaGCAGUGGCAGCGcca -5'
15963 3' -56.9 NC_004065.1 + 160900 0.67 0.885862
Target:  5'- --aGCACCuUGUCGgcgCGCCG-CGCGu- -3'
miRNA:   3'- uuaCGUGG-ACAGCa--GUGGCaGCGCca -5'
15963 3' -56.9 NC_004065.1 + 169568 0.76 0.428896
Target:  5'- -cUGCGCgCUGUUGcCGCUGUCGCGGc -3'
miRNA:   3'- uuACGUG-GACAGCaGUGGCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 189385 0.66 0.916685
Target:  5'- --cGUGCCguucggCGUCACCGUCGCcgaGGa -3'
miRNA:   3'- uuaCGUGGaca---GCAGUGGCAGCG---CCa -5'
15963 3' -56.9 NC_004065.1 + 195431 0.67 0.898852
Target:  5'- ---cCGCCg--CGUCGCCGUCGuCGGa -3'
miRNA:   3'- uuacGUGGacaGCAGUGGCAGC-GCCa -5'
15963 3' -56.9 NC_004065.1 + 199224 0.66 0.915559
Target:  5'- cGAUGUACCguccguccgucaGUCGUCAUCGUCgGCGu- -3'
miRNA:   3'- -UUACGUGGa-----------CAGCAGUGGCAG-CGCca -5'
15963 3' -56.9 NC_004065.1 + 220283 0.66 0.932492
Target:  5'- aGAUGCGCCUGUacaGgUACC-UgGCGGUg -3'
miRNA:   3'- -UUACGUGGACAg--CaGUGGcAgCGCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.