miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15963 3' -56.9 NC_004065.1 + 30802 1.05 0.006059
Target:  5'- cAAUGCACCUGUCGUCACCGUCGCGGUg -3'
miRNA:   3'- -UUACGUGGACAGCAGUGGCAGCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 30012 0.67 0.879046
Target:  5'- -cUGCGCgac-CGUCACCGgCGCGGUg -3'
miRNA:   3'- uuACGUGgacaGCAGUGGCaGCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 125340 0.67 0.885862
Target:  5'- --aGCACCUGcagCGUCGCC-UCGUGa- -3'
miRNA:   3'- uuaCGUGGACa--GCAGUGGcAGCGCca -5'
15963 3' -56.9 NC_004065.1 + 195431 0.67 0.898852
Target:  5'- ---cCGCCg--CGUCGCCGUCGuCGGa -3'
miRNA:   3'- uuacGUGGacaGCAGUGGCAGC-GCCa -5'
15963 3' -56.9 NC_004065.1 + 51493 0.66 0.910964
Target:  5'- aGAUGUAgaacaugacuccCCUGUCGUaggccaugacgaCGCCGUCGCGu- -3'
miRNA:   3'- -UUACGU------------GGACAGCA------------GUGGCAGCGCca -5'
15963 3' -56.9 NC_004065.1 + 199224 0.66 0.915559
Target:  5'- cGAUGUACCguccguccgucaGUCGUCAUCGUCgGCGu- -3'
miRNA:   3'- -UUACGUGGa-----------CAGCAGUGGCAG-CGCca -5'
15963 3' -56.9 NC_004065.1 + 150573 0.66 0.916685
Target:  5'- --aGUACCUGUCGUCcGCCG-CGUa-- -3'
miRNA:   3'- uuaCGUGGACAGCAG-UGGCaGCGcca -5'
15963 3' -56.9 NC_004065.1 + 151697 0.66 0.916685
Target:  5'- --gGCGcCCUGcaUCGUCugCGUCG-GGUc -3'
miRNA:   3'- uuaCGU-GGAC--AGCAGugGCAGCgCCA- -5'
15963 3' -56.9 NC_004065.1 + 189385 0.66 0.916685
Target:  5'- --cGUGCCguucggCGUCACCGUCGCcgaGGa -3'
miRNA:   3'- uuaCGUGGaca---GCAGUGGCAGCG---CCa -5'
15963 3' -56.9 NC_004065.1 + 118114 0.68 0.864794
Target:  5'- --gGCGUCUcUCGUCGCCG-CGCGGa -3'
miRNA:   3'- uuaCGUGGAcAGCAGUGGCaGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 24587 0.68 0.857367
Target:  5'- --cGCGCgUGUCGUCGCCGccaccgccgcCGcCGGUg -3'
miRNA:   3'- uuaCGUGgACAGCAGUGGCa---------GC-GCCA- -5'
15963 3' -56.9 NC_004065.1 + 146544 0.68 0.856614
Target:  5'- --gGUcgGCCUGcccgacaUCGUCGgCGUCGCGGg -3'
miRNA:   3'- uuaCG--UGGAC-------AGCAGUgGCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 169568 0.76 0.428896
Target:  5'- -cUGCGCgCUGUUGcCGCUGUCGCGGc -3'
miRNA:   3'- uuACGUG-GACAGCaGUGGCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 97452 0.76 0.437613
Target:  5'- --gGCGCCcgUGUCGUCGaaGUCGCGGa -3'
miRNA:   3'- uuaCGUGG--ACAGCAGUggCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 145753 0.74 0.510728
Target:  5'- gAGUGCGCCgaucgcGUCGcgCGCCgGUCGCGGg -3'
miRNA:   3'- -UUACGUGGa-----CAGCa-GUGG-CAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 153961 0.74 0.539458
Target:  5'- -cUGCgACUUGUCuG-CGCCGUCGCGGUc -3'
miRNA:   3'- uuACG-UGGACAG-CaGUGGCAGCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 115524 0.7 0.74575
Target:  5'- ----aACCUGUCuGUCACCGUgaUGCGGg -3'
miRNA:   3'- uuacgUGGACAG-CAGUGGCA--GCGCCa -5'
15963 3' -56.9 NC_004065.1 + 34992 0.7 0.773581
Target:  5'- --gGCACCUcgacGUCGUCGCCcGUCGuUGGc -3'
miRNA:   3'- uuaCGUGGA----CAGCAGUGG-CAGC-GCCa -5'
15963 3' -56.9 NC_004065.1 + 116715 0.69 0.782629
Target:  5'- uGGUGCGCC-GUC-UCGCUggGUCGCGGg -3'
miRNA:   3'- -UUACGUGGaCAGcAGUGG--CAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 42882 0.68 0.849747
Target:  5'- --cGCACCUGUCGaaagagacacaUCACCG-CGCa-- -3'
miRNA:   3'- uuaCGUGGACAGC-----------AGUGGCaGCGcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.