miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15963 3' -56.9 NC_004065.1 + 87183 0.68 0.872022
Target:  5'- -cUGCACCgcgcgGUCGUCGCgCGacCGCaGGUa -3'
miRNA:   3'- uuACGUGGa----CAGCAGUG-GCa-GCG-CCA- -5'
15963 3' -56.9 NC_004065.1 + 160900 0.67 0.885862
Target:  5'- --aGCACCuUGUCGgcgCGCCG-CGCGu- -3'
miRNA:   3'- uuaCGUGG-ACAGCa--GUGGCaGCGCca -5'
15963 3' -56.9 NC_004065.1 + 111169 0.67 0.905019
Target:  5'- -cUGCGCUUcgUGUCGCgGUCGUGGa -3'
miRNA:   3'- uuACGUGGAcaGCAGUGgCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 130637 0.67 0.907424
Target:  5'- --cGCACCUGUCGcucgagucgggacagUCggcGCCGUCGCu-- -3'
miRNA:   3'- uuaCGUGGACAGC---------------AG---UGGCAGCGcca -5'
15963 3' -56.9 NC_004065.1 + 220283 0.66 0.932492
Target:  5'- aGAUGCGCCUGUacaGgUACC-UgGCGGUg -3'
miRNA:   3'- -UUACGUGGACAg--CaGUGGcAgCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 41998 0.68 0.849747
Target:  5'- -uUGCGUCguguugGUCGUgucUACCGUCGCGGa -3'
miRNA:   3'- uuACGUGGa-----CAGCA---GUGGCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 111929 0.7 0.755132
Target:  5'- --aGaCGCCaUGggCGcCGCCGUCGCGGUg -3'
miRNA:   3'- uuaC-GUGG-ACa-GCaGUGGCAGCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 133441 0.7 0.74575
Target:  5'- gAGUGCAgC-GUCGcCACgCGUCGCGGc -3'
miRNA:   3'- -UUACGUgGaCAGCaGUG-GCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 130905 0.71 0.726709
Target:  5'- --cGCACCUG-CGUUGCCGUCaaaCGGg -3'
miRNA:   3'- uuaCGUGGACaGCAGUGGCAGc--GCCa -5'
15963 3' -56.9 NC_004065.1 + 22400 0.71 0.717069
Target:  5'- cAUGgAgCUGUCccugGUCACCGUCGUGGc -3'
miRNA:   3'- uUACgUgGACAG----CAGUGGCAGCGCCa -5'
15963 3' -56.9 NC_004065.1 + 91903 0.71 0.70736
Target:  5'- cAUGCucACCgacgCGaUCGCCGUCGCGGUc -3'
miRNA:   3'- uUACG--UGGaca-GC-AGUGGCAGCGCCA- -5'
15963 3' -56.9 NC_004065.1 + 56036 0.72 0.667011
Target:  5'- --aGCuCCUGuucgucaUCGUCGCCGUCGCGa- -3'
miRNA:   3'- uuaCGuGGAC-------AGCAGUGGCAGCGCca -5'
15963 3' -56.9 NC_004065.1 + 158294 0.73 0.588442
Target:  5'- --aGCGCCg--CGUCACCGUCGCa-- -3'
miRNA:   3'- uuaCGUGGacaGCAGUGGCAGCGcca -5'
15963 3' -56.9 NC_004065.1 + 101444 0.66 0.937308
Target:  5'- gGAUGCGCCUucgccgccgacGUCGcUGCCGcUGCGGg -3'
miRNA:   3'- -UUACGUGGA-----------CAGCaGUGGCaGCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.