Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15963 | 3' | -56.9 | NC_004065.1 | + | 56036 | 0.72 | 0.667011 |
Target: 5'- --aGCuCCUGuucgucaUCGUCGCCGUCGCGa- -3' miRNA: 3'- uuaCGuGGAC-------AGCAGUGGCAGCGCca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 220283 | 0.66 | 0.932492 |
Target: 5'- aGAUGCGCCUGUacaGgUACC-UgGCGGUg -3' miRNA: 3'- -UUACGUGGACAg--CaGUGGcAgCGCCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 160900 | 0.67 | 0.885862 |
Target: 5'- --aGCACCuUGUCGgcgCGCCG-CGCGu- -3' miRNA: 3'- uuaCGUGG-ACAGCa--GUGGCaGCGCca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 87183 | 0.68 | 0.872022 |
Target: 5'- -cUGCACCgcgcgGUCGUCGCgCGacCGCaGGUa -3' miRNA: 3'- uuACGUGGa----CAGCAGUG-GCa-GCG-CCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 111929 | 0.7 | 0.755132 |
Target: 5'- --aGaCGCCaUGggCGcCGCCGUCGCGGUg -3' miRNA: 3'- uuaC-GUGG-ACa-GCaGUGGCAGCGCCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 133441 | 0.7 | 0.74575 |
Target: 5'- gAGUGCAgC-GUCGcCACgCGUCGCGGc -3' miRNA: 3'- -UUACGUgGaCAGCaGUG-GCAGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 101444 | 0.66 | 0.937308 |
Target: 5'- gGAUGCGCCUucgccgccgacGUCGcUGCCGcUGCGGg -3' miRNA: 3'- -UUACGUGGA-----------CAGCaGUGGCaGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 130637 | 0.67 | 0.907424 |
Target: 5'- --cGCACCUGUCGcucgagucgggacagUCggcGCCGUCGCu-- -3' miRNA: 3'- uuaCGUGGACAGC---------------AG---UGGCAGCGcca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 41998 | 0.68 | 0.849747 |
Target: 5'- -uUGCGUCguguugGUCGUgucUACCGUCGCGGa -3' miRNA: 3'- uuACGUGGa-----CAGCA---GUGGCAGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 130905 | 0.71 | 0.726709 |
Target: 5'- --cGCACCUG-CGUUGCCGUCaaaCGGg -3' miRNA: 3'- uuaCGUGGACaGCAGUGGCAGc--GCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 91903 | 0.71 | 0.70736 |
Target: 5'- cAUGCucACCgacgCGaUCGCCGUCGCGGUc -3' miRNA: 3'- uUACG--UGGaca-GC-AGUGGCAGCGCCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 22400 | 0.71 | 0.717069 |
Target: 5'- cAUGgAgCUGUCccugGUCACCGUCGUGGc -3' miRNA: 3'- uUACgUgGACAG----CAGUGGCAGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 111169 | 0.67 | 0.905019 |
Target: 5'- -cUGCGCUUcgUGUCGCgGUCGUGGa -3' miRNA: 3'- uuACGUGGAcaGCAGUGgCAGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 158294 | 0.73 | 0.588442 |
Target: 5'- --aGCGCCg--CGUCACCGUCGCa-- -3' miRNA: 3'- uuaCGUGGacaGCAGUGGCAGCGcca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 195431 | 0.67 | 0.898852 |
Target: 5'- ---cCGCCg--CGUCGCCGUCGuCGGa -3' miRNA: 3'- uuacGUGGacaGCAGUGGCAGC-GCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 125340 | 0.67 | 0.885862 |
Target: 5'- --aGCACCUGcagCGUCGCC-UCGUGa- -3' miRNA: 3'- uuaCGUGGACa--GCAGUGGcAGCGCca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 30012 | 0.67 | 0.879046 |
Target: 5'- -cUGCGCgac-CGUCACCGgCGCGGUg -3' miRNA: 3'- uuACGUGgacaGCAGUGGCaGCGCCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 118114 | 0.68 | 0.864794 |
Target: 5'- --gGCGUCUcUCGUCGCCG-CGCGGa -3' miRNA: 3'- uuaCGUGGAcAGCAGUGGCaGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 97452 | 0.76 | 0.437613 |
Target: 5'- --gGCGCCcgUGUCGUCGaaGUCGCGGa -3' miRNA: 3'- uuaCGUGG--ACAGCAGUggCAGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 34992 | 0.7 | 0.773581 |
Target: 5'- --gGCACCUcgacGUCGUCGCCcGUCGuUGGc -3' miRNA: 3'- uuaCGUGGA----CAGCAGUGG-CAGC-GCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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