Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15963 | 3' | -56.9 | NC_004065.1 | + | 145753 | 0.74 | 0.510728 |
Target: 5'- gAGUGCGCCgaucgcGUCGcgCGCCgGUCGCGGg -3' miRNA: 3'- -UUACGUGGa-----CAGCa-GUGG-CAGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 153961 | 0.74 | 0.539458 |
Target: 5'- -cUGCgACUUGUCuG-CGCCGUCGCGGUc -3' miRNA: 3'- uuACG-UGGACAG-CaGUGGCAGCGCCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 115524 | 0.7 | 0.74575 |
Target: 5'- ----aACCUGUCuGUCACCGUgaUGCGGg -3' miRNA: 3'- uuacgUGGACAG-CAGUGGCA--GCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 34992 | 0.7 | 0.773581 |
Target: 5'- --gGCACCUcgacGUCGUCGCCcGUCGuUGGc -3' miRNA: 3'- uuaCGUGGA----CAGCAGUGG-CAGC-GCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 116715 | 0.69 | 0.782629 |
Target: 5'- uGGUGCGCC-GUC-UCGCUggGUCGCGGg -3' miRNA: 3'- -UUACGUGGaCAGcAGUGG--CAGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 42882 | 0.68 | 0.849747 |
Target: 5'- --cGCACCUGUCGaaagagacacaUCACCG-CGCa-- -3' miRNA: 3'- uuaCGUGGACAGC-----------AGUGGCaGCGcca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 146544 | 0.68 | 0.856614 |
Target: 5'- --gGUcgGCCUGcccgacaUCGUCGgCGUCGCGGg -3' miRNA: 3'- uuaCG--UGGAC-------AGCAGUgGCAGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 24587 | 0.68 | 0.857367 |
Target: 5'- --cGCGCgUGUCGUCGCCGccaccgccgcCGcCGGUg -3' miRNA: 3'- uuaCGUGgACAGCAGUGGCa---------GC-GCCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 118114 | 0.68 | 0.864794 |
Target: 5'- --gGCGUCUcUCGUCGCCG-CGCGGa -3' miRNA: 3'- uuaCGUGGAcAGCAGUGGCaGCGCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 30012 | 0.67 | 0.879046 |
Target: 5'- -cUGCGCgac-CGUCACCGgCGCGGUg -3' miRNA: 3'- uuACGUGgacaGCAGUGGCaGCGCCA- -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 125340 | 0.67 | 0.885862 |
Target: 5'- --aGCACCUGcagCGUCGCC-UCGUGa- -3' miRNA: 3'- uuaCGUGGACa--GCAGUGGcAGCGCca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 195431 | 0.67 | 0.898852 |
Target: 5'- ---cCGCCg--CGUCGCCGUCGuCGGa -3' miRNA: 3'- uuacGUGGacaGCAGUGGCAGC-GCCa -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 51493 | 0.66 | 0.910964 |
Target: 5'- aGAUGUAgaacaugacuccCCUGUCGUaggccaugacgaCGCCGUCGCGu- -3' miRNA: 3'- -UUACGU------------GGACAGCA------------GUGGCAGCGCca -5' |
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15963 | 3' | -56.9 | NC_004065.1 | + | 30802 | 1.05 | 0.006059 |
Target: 5'- cAAUGCACCUGUCGUCACCGUCGCGGUg -3' miRNA: 3'- -UUACGUGGACAGCAGUGGCAGCGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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