miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15966 3' -55 NC_004065.1 + 138995 0.65 0.982402
Target:  5'- -uGCUACGAGCUCGGgacgguGGCCa-UGGACc -3'
miRNA:   3'- ggUGGUGUUUGAGCC------UCGGcaGCCUG- -5'
15966 3' -55 NC_004065.1 + 226796 0.65 0.982402
Target:  5'- aCCACCACAAACcacgUCGGGucgcaacauccGCUGUCa--- -3'
miRNA:   3'- -GGUGGUGUUUG----AGCCU-----------CGGCAGccug -5'
15966 3' -55 NC_004065.1 + 225583 0.65 0.982402
Target:  5'- cCCGCgACGAGCUCGaGGcCCGagGGuCa -3'
miRNA:   3'- -GGUGgUGUUUGAGCcUC-GGCagCCuG- -5'
15966 3' -55 NC_004065.1 + 162279 0.65 0.982402
Target:  5'- aCGCCGuCGGACgCGGcGCCGcUCGG-Ca -3'
miRNA:   3'- gGUGGU-GUUUGaGCCuCGGC-AGCCuG- -5'
15966 3' -55 NC_004065.1 + 61264 0.65 0.982402
Target:  5'- gCCugCGCGgcgucgacgGGCUUGGAGCUGa-GGAUc -3'
miRNA:   3'- -GGugGUGU---------UUGAGCCUCGGCagCCUG- -5'
15966 3' -55 NC_004065.1 + 91171 0.65 0.982402
Target:  5'- aUCGUCGCAGGCgacggccgCGGAagcGCCGUCGG-Cg -3'
miRNA:   3'- -GGUGGUGUUUGa-------GCCU---CGGCAGCCuG- -5'
15966 3' -55 NC_004065.1 + 6250 0.65 0.982402
Target:  5'- aUACgGCAAgcaGCUCGcGGCCGUccgcauccccgCGGACg -3'
miRNA:   3'- gGUGgUGUU---UGAGCcUCGGCA-----------GCCUG- -5'
15966 3' -55 NC_004065.1 + 132534 0.65 0.982402
Target:  5'- uCCGCCGCAGaucgcugcggcACUCcGGGCCGUucuucaucCGcGACu -3'
miRNA:   3'- -GGUGGUGUU-----------UGAGcCUCGGCA--------GC-CUG- -5'
15966 3' -55 NC_004065.1 + 174617 0.65 0.98221
Target:  5'- aCCACCACGAcgagaaacACUCccgucgguugcggGGuGCCGgaGGACu -3'
miRNA:   3'- -GGUGGUGUU--------UGAG-------------CCuCGGCagCCUG- -5'
15966 3' -55 NC_004065.1 + 89711 0.65 0.98221
Target:  5'- gCGCCACccACUUGGAgaucugcGCCGUCGu-- -3'
miRNA:   3'- gGUGGUGuuUGAGCCU-------CGGCAGCcug -5'
15966 3' -55 NC_004065.1 + 77372 0.65 0.98221
Target:  5'- gCCGCCguuggcuccgaugACGAGCgUCGG-GauGUCGGGCa -3'
miRNA:   3'- -GGUGG-------------UGUUUG-AGCCuCggCAGCCUG- -5'
15966 3' -55 NC_004065.1 + 143626 0.66 0.981223
Target:  5'- aCGCCGCGGACucccugaaggauuccUCGGGGCgaCGcgUGGACc -3'
miRNA:   3'- gGUGGUGUUUG---------------AGCCUCG--GCa-GCCUG- -5'
15966 3' -55 NC_004065.1 + 114059 0.66 0.980405
Target:  5'- uUCGCC-CAGA--UGGAcgccgacaacguGCCGUCGGACc -3'
miRNA:   3'- -GGUGGuGUUUgaGCCU------------CGGCAGCCUG- -5'
15966 3' -55 NC_004065.1 + 97875 0.66 0.980405
Target:  5'- gCCACCACGuccaGGCUCGGcgcGuuGUUGauGGCg -3'
miRNA:   3'- -GGUGGUGU----UUGAGCCu--CggCAGC--CUG- -5'
15966 3' -55 NC_004065.1 + 27976 0.66 0.980405
Target:  5'- cUCGCCAUggGCaaGGAGUCGa-GGAUg -3'
miRNA:   3'- -GGUGGUGuuUGagCCUCGGCagCCUG- -5'
15966 3' -55 NC_004065.1 + 167551 0.66 0.980405
Target:  5'- aCCGCCGCGGccGCUCcu-GCCGUCGc-- -3'
miRNA:   3'- -GGUGGUGUU--UGAGccuCGGCAGCcug -5'
15966 3' -55 NC_004065.1 + 203621 0.66 0.980405
Target:  5'- gCCGCCgugGCGGAgUUGGAGgCGg-GGGCa -3'
miRNA:   3'- -GGUGG---UGUUUgAGCCUCgGCagCCUG- -5'
15966 3' -55 NC_004065.1 + 179015 0.66 0.979774
Target:  5'- cUCGCCGCGGcgucuccucccaucGCUCGGAGggcuaUCGagGGACc -3'
miRNA:   3'- -GGUGGUGUU--------------UGAGCCUC-----GGCagCCUG- -5'
15966 3' -55 NC_004065.1 + 174923 0.66 0.978243
Target:  5'- gCCGCCGCGGGCgccaGGAuuauuauuuaacGCUGUCGcGAa -3'
miRNA:   3'- -GGUGGUGUUUGag--CCU------------CGGCAGC-CUg -5'
15966 3' -55 NC_004065.1 + 101453 0.66 0.978243
Target:  5'- uUCGCCGCcGACgUCGcuGCCGcugCGGGCg -3'
miRNA:   3'- -GGUGGUGuUUG-AGCcuCGGCa--GCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.