miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15966 5' -60.1 NC_004065.1 + 157974 0.66 0.85406
Target:  5'- -gGUCGuGAUGGCguacacguacUCCGGGUGCagcgCCGCc -3'
miRNA:   3'- agUAGC-CUGCCG----------AGGCUCACG----GGCGa -5'
15966 5' -60.1 NC_004065.1 + 65207 0.66 0.846588
Target:  5'- cUCcUCGGAaaCGGC-CaGAGUGCCgGCg -3'
miRNA:   3'- -AGuAGCCU--GCCGaGgCUCACGGgCGa -5'
15966 5' -60.1 NC_004065.1 + 143892 0.66 0.838943
Target:  5'- gUCAggugcgCGGACGGgaCgGuGGUGCCCaGCg -3'
miRNA:   3'- -AGUa-----GCCUGCCgaGgC-UCACGGG-CGa -5'
15966 5' -60.1 NC_004065.1 + 123736 0.66 0.831129
Target:  5'- -gAUCGaGAUGGcCUCCGguccagcaccucGGUGCgCCGCg -3'
miRNA:   3'- agUAGC-CUGCC-GAGGC------------UCACG-GGCGa -5'
15966 5' -60.1 NC_004065.1 + 136483 0.66 0.831129
Target:  5'- gCAUCGG-CGGCUCCGGcgGUCUGg- -3'
miRNA:   3'- aGUAGCCuGCCGAGGCUcaCGGGCga -5'
15966 5' -60.1 NC_004065.1 + 170917 0.66 0.823154
Target:  5'- -gGUCaGGGCGGCauaguaucgggUCGAGUGUCUGCg -3'
miRNA:   3'- agUAG-CCUGCCGa----------GGCUCACGGGCGa -5'
15966 5' -60.1 NC_004065.1 + 93324 0.66 0.823154
Target:  5'- gUCAUCGuGGCGGauaaaagCuCGAGccgGCCCGCc -3'
miRNA:   3'- -AGUAGC-CUGCCga-----G-GCUCa--CGGGCGa -5'
15966 5' -60.1 NC_004065.1 + 211507 0.66 0.815025
Target:  5'- cCGUCGGGuuCGGCUCUGAGggucGUCgGUg -3'
miRNA:   3'- aGUAGCCU--GCCGAGGCUCa---CGGgCGa -5'
15966 5' -60.1 NC_004065.1 + 168577 0.66 0.815025
Target:  5'- aCAgCGGGCgucucGGC-CCGAGUGCuaGCUg -3'
miRNA:   3'- aGUaGCCUG-----CCGaGGCUCACGggCGA- -5'
15966 5' -60.1 NC_004065.1 + 74599 0.67 0.806746
Target:  5'- cCGUCGGugGCGGUggcggCCGAGUuCCCGg- -3'
miRNA:   3'- aGUAGCC--UGCCGa----GGCUCAcGGGCga -5'
15966 5' -60.1 NC_004065.1 + 197778 0.67 0.806746
Target:  5'- uUCAUCGGAucgcCGGUgUCCGcGUuggucaccagcGCCCGCg -3'
miRNA:   3'- -AGUAGCCU----GCCG-AGGCuCA-----------CGGGCGa -5'
15966 5' -60.1 NC_004065.1 + 119168 0.67 0.806746
Target:  5'- gCAUgGcGACGGUUCgacgCGGGcgGCCCGCg -3'
miRNA:   3'- aGUAgC-CUGCCGAG----GCUCa-CGGGCGa -5'
15966 5' -60.1 NC_004065.1 + 128373 0.67 0.798327
Target:  5'- cCAUCGGGgcuuCGGCggCGAGaGCCgGCUg -3'
miRNA:   3'- aGUAGCCU----GCCGagGCUCaCGGgCGA- -5'
15966 5' -60.1 NC_004065.1 + 117457 0.67 0.789773
Target:  5'- gCGUCGucCGGCUCCGcGgccGCUCGCc -3'
miRNA:   3'- aGUAGCcuGCCGAGGCuCa--CGGGCGa -5'
15966 5' -60.1 NC_004065.1 + 59334 0.67 0.787182
Target:  5'- gCcgCGGGCGGCgugcgauuuccagcUCCGAGUGCgUGg- -3'
miRNA:   3'- aGuaGCCUGCCG--------------AGGCUCACGgGCga -5'
15966 5' -60.1 NC_004065.1 + 111796 0.68 0.736056
Target:  5'- cCGUC-GACGGCUCCGA-UGaCCGCc -3'
miRNA:   3'- aGUAGcCUGCCGAGGCUcACgGGCGa -5'
15966 5' -60.1 NC_004065.1 + 24753 0.68 0.717422
Target:  5'- cUCGUUGGGCGGCcccCCGuugGCCgGCg -3'
miRNA:   3'- -AGUAGCCUGCCGa--GGCucaCGGgCGa -5'
15966 5' -60.1 NC_004065.1 + 166145 0.68 0.708003
Target:  5'- aCGUCGGcgccggcggcaGCGGCgCCGAcgucGUGCaCCGCg -3'
miRNA:   3'- aGUAGCC-----------UGCCGaGGCU----CACG-GGCGa -5'
15966 5' -60.1 NC_004065.1 + 179769 0.69 0.698527
Target:  5'- -aAUCGGGCGuCUUCGAGUGCUC-CUa -3'
miRNA:   3'- agUAGCCUGCcGAGGCUCACGGGcGA- -5'
15966 5' -60.1 NC_004065.1 + 53393 0.69 0.698527
Target:  5'- aUCGUacgUGGA-GGCgCCGGGcGCCCGCUa -3'
miRNA:   3'- -AGUA---GCCUgCCGaGGCUCaCGGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.