Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15966 | 5' | -60.1 | NC_004065.1 | + | 32260 | 1.08 | 0.002298 |
Target: 5'- aUCAUCGGACGGCUCCGAGUGCCCGCUg -3' miRNA: 3'- -AGUAGCCUGCCGAGGCUCACGGGCGA- -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 39096 | 0.74 | 0.379886 |
Target: 5'- uUCAUCGGAUGgguGCUCCGAG-GCCUGa- -3' miRNA: 3'- -AGUAGCCUGC---CGAGGCUCaCGGGCga -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 107893 | 0.72 | 0.516976 |
Target: 5'- aUCA-CGGACGugauCUCCGAGcaGCCCGCg -3' miRNA: 3'- -AGUaGCCUGCc---GAGGCUCa-CGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 223080 | 0.71 | 0.535581 |
Target: 5'- cCGUCGacgcagcuuccGACGGCggacgCCGAggccGUGCCCGCa -3' miRNA: 3'- aGUAGC-----------CUGCCGa----GGCU----CACGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 146398 | 0.71 | 0.583011 |
Target: 5'- uUCuUCGGGCccaauaugcuGcGCUCCGGGgGCCCGCg -3' miRNA: 3'- -AGuAGCCUG----------C-CGAGGCUCaCGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 139284 | 0.71 | 0.583011 |
Target: 5'- aCAUCgGGACGcuGCUCCGAGcGCuCUGCg -3' miRNA: 3'- aGUAG-CCUGC--CGAGGCUCaCG-GGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 195275 | 0.7 | 0.631219 |
Target: 5'- gUCAUCGGAC-GCUCCGAGaUGCaguucaucgUGCUg -3' miRNA: 3'- -AGUAGCCUGcCGAGGCUC-ACGg--------GCGA- -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 150020 | 0.69 | 0.649585 |
Target: 5'- aCGUCuGGCGGCUCgGAaGgaggaacUGCCCGCg -3' miRNA: 3'- aGUAGcCUGCCGAGgCU-C-------ACGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 30871 | 0.69 | 0.650551 |
Target: 5'- -uGUCGacGGCGGgUUCGAGcGCCCGCa -3' miRNA: 3'- agUAGC--CUGCCgAGGCUCaCGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 102549 | 0.69 | 0.650551 |
Target: 5'- cUCGUCGG-UGGCgCCGGGgucggGuCCCGCg -3' miRNA: 3'- -AGUAGCCuGCCGaGGCUCa----C-GGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 204550 | 0.69 | 0.660201 |
Target: 5'- cUCGUCGGGCGGCgggaGGUGCUgCGCg -3' miRNA: 3'- -AGUAGCCUGCCGaggcUCACGG-GCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 17958 | 0.69 | 0.669831 |
Target: 5'- gUCGcCGGACGGUcgUCCGucUGCCgCGCg -3' miRNA: 3'- -AGUaGCCUGCCG--AGGCucACGG-GCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 112718 | 0.69 | 0.683265 |
Target: 5'- uUCA-CGGAUGGUgcacgaaccugagucUCCGGGUgaccaaggGCCCGCUc -3' miRNA: 3'- -AGUaGCCUGCCG---------------AGGCUCA--------CGGGCGA- -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 50742 | 0.69 | 0.689002 |
Target: 5'- gCA-CGG-CGGCUCCGuGUGgUCGCg -3' miRNA: 3'- aGUaGCCuGCCGAGGCuCACgGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 122066 | 0.69 | 0.698527 |
Target: 5'- ----gGGACGGCUaCCGcgucuaccaGGUGCcCCGCUg -3' miRNA: 3'- aguagCCUGCCGA-GGC---------UCACG-GGCGA- -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 179769 | 0.69 | 0.698527 |
Target: 5'- -aAUCGGGCGuCUUCGAGUGCUC-CUa -3' miRNA: 3'- agUAGCCUGCcGAGGCUCACGGGcGA- -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 53393 | 0.69 | 0.698527 |
Target: 5'- aUCGUacgUGGA-GGCgCCGGGcGCCCGCUa -3' miRNA: 3'- -AGUA---GCCUgCCGaGGCUCaCGGGCGA- -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 166145 | 0.68 | 0.708003 |
Target: 5'- aCGUCGGcgccggcggcaGCGGCgCCGAcgucGUGCaCCGCg -3' miRNA: 3'- aGUAGCC-----------UGCCGaGGCU----CACG-GGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 24753 | 0.68 | 0.717422 |
Target: 5'- cUCGUUGGGCGGCcccCCGuugGCCgGCg -3' miRNA: 3'- -AGUAGCCUGCCGa--GGCucaCGGgCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 111796 | 0.68 | 0.736056 |
Target: 5'- cCGUC-GACGGCUCCGA-UGaCCGCc -3' miRNA: 3'- aGUAGcCUGCCGAGGCUcACgGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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