miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15966 5' -60.1 NC_004065.1 + 122066 0.69 0.698527
Target:  5'- ----gGGACGGCUaCCGcgucuaccaGGUGCcCCGCUg -3'
miRNA:   3'- aguagCCUGCCGA-GGC---------UCACG-GGCGA- -5'
15966 5' -60.1 NC_004065.1 + 50742 0.69 0.689002
Target:  5'- gCA-CGG-CGGCUCCGuGUGgUCGCg -3'
miRNA:   3'- aGUaGCCuGCCGAGGCuCACgGGCGa -5'
15966 5' -60.1 NC_004065.1 + 112718 0.69 0.683265
Target:  5'- uUCA-CGGAUGGUgcacgaaccugagucUCCGGGUgaccaaggGCCCGCUc -3'
miRNA:   3'- -AGUaGCCUGCCG---------------AGGCUCA--------CGGGCGA- -5'
15966 5' -60.1 NC_004065.1 + 17958 0.69 0.669831
Target:  5'- gUCGcCGGACGGUcgUCCGucUGCCgCGCg -3'
miRNA:   3'- -AGUaGCCUGCCG--AGGCucACGG-GCGa -5'
15966 5' -60.1 NC_004065.1 + 204550 0.69 0.660201
Target:  5'- cUCGUCGGGCGGCgggaGGUGCUgCGCg -3'
miRNA:   3'- -AGUAGCCUGCCGaggcUCACGG-GCGa -5'
15966 5' -60.1 NC_004065.1 + 102549 0.69 0.650551
Target:  5'- cUCGUCGG-UGGCgCCGGGgucggGuCCCGCg -3'
miRNA:   3'- -AGUAGCCuGCCGaGGCUCa----C-GGGCGa -5'
15966 5' -60.1 NC_004065.1 + 30871 0.69 0.650551
Target:  5'- -uGUCGacGGCGGgUUCGAGcGCCCGCa -3'
miRNA:   3'- agUAGC--CUGCCgAGGCUCaCGGGCGa -5'
15966 5' -60.1 NC_004065.1 + 150020 0.69 0.649585
Target:  5'- aCGUCuGGCGGCUCgGAaGgaggaacUGCCCGCg -3'
miRNA:   3'- aGUAGcCUGCCGAGgCU-C-------ACGGGCGa -5'
15966 5' -60.1 NC_004065.1 + 195275 0.7 0.631219
Target:  5'- gUCAUCGGAC-GCUCCGAGaUGCaguucaucgUGCUg -3'
miRNA:   3'- -AGUAGCCUGcCGAGGCUC-ACGg--------GCGA- -5'
15966 5' -60.1 NC_004065.1 + 139284 0.71 0.583011
Target:  5'- aCAUCgGGACGcuGCUCCGAGcGCuCUGCg -3'
miRNA:   3'- aGUAG-CCUGC--CGAGGCUCaCG-GGCGa -5'
15966 5' -60.1 NC_004065.1 + 146398 0.71 0.583011
Target:  5'- uUCuUCGGGCccaauaugcuGcGCUCCGGGgGCCCGCg -3'
miRNA:   3'- -AGuAGCCUG----------C-CGAGGCUCaCGGGCGa -5'
15966 5' -60.1 NC_004065.1 + 223080 0.71 0.535581
Target:  5'- cCGUCGacgcagcuuccGACGGCggacgCCGAggccGUGCCCGCa -3'
miRNA:   3'- aGUAGC-----------CUGCCGa----GGCU----CACGGGCGa -5'
15966 5' -60.1 NC_004065.1 + 107893 0.72 0.516976
Target:  5'- aUCA-CGGACGugauCUCCGAGcaGCCCGCg -3'
miRNA:   3'- -AGUaGCCUGCc---GAGGCUCa-CGGGCGa -5'
15966 5' -60.1 NC_004065.1 + 39096 0.74 0.379886
Target:  5'- uUCAUCGGAUGgguGCUCCGAG-GCCUGa- -3'
miRNA:   3'- -AGUAGCCUGC---CGAGGCUCaCGGGCga -5'
15966 5' -60.1 NC_004065.1 + 32260 1.08 0.002298
Target:  5'- aUCAUCGGACGGCUCCGAGUGCCCGCUg -3'
miRNA:   3'- -AGUAGCCUGCCGAGGCUCACGGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.