Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15966 | 5' | -60.1 | NC_004065.1 | + | 32260 | 1.08 | 0.002298 |
Target: 5'- aUCAUCGGACGGCUCCGAGUGCCCGCUg -3' miRNA: 3'- -AGUAGCCUGCCGAGGCUCACGGGCGA- -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 128373 | 0.67 | 0.798327 |
Target: 5'- cCAUCGGGgcuuCGGCggCGAGaGCCgGCUg -3' miRNA: 3'- aGUAGCCU----GCCGagGCUCaCGGgCGA- -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 74599 | 0.67 | 0.806746 |
Target: 5'- cCGUCGGugGCGGUggcggCCGAGUuCCCGg- -3' miRNA: 3'- aGUAGCC--UGCCGa----GGCUCAcGGGCga -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 197778 | 0.67 | 0.806746 |
Target: 5'- uUCAUCGGAucgcCGGUgUCCGcGUuggucaccagcGCCCGCg -3' miRNA: 3'- -AGUAGCCU----GCCG-AGGCuCA-----------CGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 168577 | 0.66 | 0.815025 |
Target: 5'- aCAgCGGGCgucucGGC-CCGAGUGCuaGCUg -3' miRNA: 3'- aGUaGCCUG-----CCGaGGCUCACGggCGA- -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 93324 | 0.66 | 0.823154 |
Target: 5'- gUCAUCGuGGCGGauaaaagCuCGAGccgGCCCGCc -3' miRNA: 3'- -AGUAGC-CUGCCga-----G-GCUCa--CGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 170917 | 0.66 | 0.823154 |
Target: 5'- -gGUCaGGGCGGCauaguaucgggUCGAGUGUCUGCg -3' miRNA: 3'- agUAG-CCUGCCGa----------GGCUCACGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 123736 | 0.66 | 0.831129 |
Target: 5'- -gAUCGaGAUGGcCUCCGguccagcaccucGGUGCgCCGCg -3' miRNA: 3'- agUAGC-CUGCC-GAGGC------------UCACG-GGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 136483 | 0.66 | 0.831129 |
Target: 5'- gCAUCGG-CGGCUCCGGcgGUCUGg- -3' miRNA: 3'- aGUAGCCuGCCGAGGCUcaCGGGCga -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 117457 | 0.67 | 0.789773 |
Target: 5'- gCGUCGucCGGCUCCGcGgccGCUCGCc -3' miRNA: 3'- aGUAGCcuGCCGAGGCuCa--CGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 111796 | 0.68 | 0.736056 |
Target: 5'- cCGUC-GACGGCUCCGA-UGaCCGCc -3' miRNA: 3'- aGUAGcCUGCCGAGGCUcACgGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 223080 | 0.71 | 0.535581 |
Target: 5'- cCGUCGacgcagcuuccGACGGCggacgCCGAggccGUGCCCGCa -3' miRNA: 3'- aGUAGC-----------CUGCCGa----GGCU----CACGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 139284 | 0.71 | 0.583011 |
Target: 5'- aCAUCgGGACGcuGCUCCGAGcGCuCUGCg -3' miRNA: 3'- aGUAG-CCUGC--CGAGGCUCaCG-GGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 146398 | 0.71 | 0.583011 |
Target: 5'- uUCuUCGGGCccaauaugcuGcGCUCCGGGgGCCCGCg -3' miRNA: 3'- -AGuAGCCUG----------C-CGAGGCUCaCGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 30871 | 0.69 | 0.650551 |
Target: 5'- -uGUCGacGGCGGgUUCGAGcGCCCGCa -3' miRNA: 3'- agUAGC--CUGCCgAGGCUCaCGGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 17958 | 0.69 | 0.669831 |
Target: 5'- gUCGcCGGACGGUcgUCCGucUGCCgCGCg -3' miRNA: 3'- -AGUaGCCUGCCG--AGGCucACGG-GCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 50742 | 0.69 | 0.689002 |
Target: 5'- gCA-CGG-CGGCUCCGuGUGgUCGCg -3' miRNA: 3'- aGUaGCCuGCCGAGGCuCACgGGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 166145 | 0.68 | 0.708003 |
Target: 5'- aCGUCGGcgccggcggcaGCGGCgCCGAcgucGUGCaCCGCg -3' miRNA: 3'- aGUAGCC-----------UGCCGaGGCU----CACG-GGCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 24753 | 0.68 | 0.717422 |
Target: 5'- cUCGUUGGGCGGCcccCCGuugGCCgGCg -3' miRNA: 3'- -AGUAGCCUGCCGa--GGCucaCGGgCGa -5' |
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15966 | 5' | -60.1 | NC_004065.1 | + | 157974 | 0.66 | 0.85406 |
Target: 5'- -gGUCGuGAUGGCguacacguacUCCGGGUGCagcgCCGCc -3' miRNA: 3'- agUAGC-CUGCCG----------AGGCUCACG----GGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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