miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 48118 0.66 0.947213
Target:  5'- gCGgCGGCGGUGggaccucgcgcacgUUGCCGACGuGCGg -3'
miRNA:   3'- -GCgGCCGCCAUa-------------GGCGGCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 64914 0.66 0.945518
Target:  5'- uCGCCgGGCGGgacgCCGCCucagaGACGAcgGCGc -3'
miRNA:   3'- -GCGG-CCGCCaua-GGCGG-----CUGUU--UGUa -5'
15967 3' -56.7 NC_004065.1 + 122500 0.66 0.945518
Target:  5'- aGCUgGGCGGUcgCCGCgCGcaccuccucguGCGAGCGg -3'
miRNA:   3'- gCGG-CCGCCAuaGGCG-GC-----------UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 77201 0.66 0.945518
Target:  5'- uGCgCGGCGGcgccCCGCaCGGCGAugGc -3'
miRNA:   3'- gCG-GCCGCCaua-GGCG-GCUGUUugUa -5'
15967 3' -56.7 NC_004065.1 + 52883 0.66 0.945518
Target:  5'- aCGCCcGCGGUAagccUCCGauGACAcACAa -3'
miRNA:   3'- -GCGGcCGCCAU----AGGCggCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 75592 0.66 0.941129
Target:  5'- uCGCCGGCGGggggaggCCGCUGGg------ -3'
miRNA:   3'- -GCGGCCGCCaua----GGCGGCUguuugua -5'
15967 3' -56.7 NC_004065.1 + 22926 0.66 0.941129
Target:  5'- gGUCGGCGGUuccGUCuCGUCGuCAGAUu- -3'
miRNA:   3'- gCGGCCGCCA---UAG-GCGGCuGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 78355 0.66 0.941129
Target:  5'- gCGCUGGCGGUAgagcucgCUGUCGuugaGGGCGUu -3'
miRNA:   3'- -GCGGCCGCCAUa------GGCGGCug--UUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 871 0.66 0.941129
Target:  5'- uGCCGGgcgaGGgcgccCCGCCGGCAugcuACAg -3'
miRNA:   3'- gCGGCCg---CCaua--GGCGGCUGUu---UGUa -5'
15967 3' -56.7 NC_004065.1 + 139915 0.66 0.936516
Target:  5'- gGCCGGCGGcgccagcggguUGaacuucgucUCCGUCGACAGGa-- -3'
miRNA:   3'- gCGGCCGCC-----------AU---------AGGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 99082 0.66 0.936516
Target:  5'- uGCCgauGGgGGUG-CCGUCGACcAACAa -3'
miRNA:   3'- gCGG---CCgCCAUaGGCGGCUGuUUGUa -5'
15967 3' -56.7 NC_004065.1 + 141653 0.66 0.936516
Target:  5'- gCGgUGGCGGUG-CCGCgGccGCGGACGa -3'
miRNA:   3'- -GCgGCCGCCAUaGGCGgC--UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 210090 0.66 0.936516
Target:  5'- uGCCGaCGGUGUCCGUCG-UAAcCAc -3'
miRNA:   3'- gCGGCcGCCAUAGGCGGCuGUUuGUa -5'
15967 3' -56.7 NC_004065.1 + 100402 0.66 0.936516
Target:  5'- aGCCGGCGG-GUCCaguucuccgcGCUGACcgcGCAg -3'
miRNA:   3'- gCGGCCGCCaUAGG----------CGGCUGuu-UGUa -5'
15967 3' -56.7 NC_004065.1 + 122235 0.66 0.935089
Target:  5'- gGCCGGCGGgucguuccUGUCgccgcugcugcccgCGCCGACAccgaccuggGGCAUc -3'
miRNA:   3'- gCGGCCGCC--------AUAG--------------GCGGCUGU---------UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 164560 0.66 0.93168
Target:  5'- aGCCGGCGGcgg-CGCCGACc----- -3'
miRNA:   3'- gCGGCCGCCauagGCGGCUGuuugua -5'
15967 3' -56.7 NC_004065.1 + 164178 0.66 0.92867
Target:  5'- aGCCGcaugucgucgugcgcGCGGaucUCCGCCGGCAucGCGUu -3'
miRNA:   3'- gCGGC---------------CGCCau-AGGCGGCUGUu-UGUA- -5'
15967 3' -56.7 NC_004065.1 + 101856 0.66 0.926619
Target:  5'- gCGUCGGgGGcgcuaUcgCCGCCG-CAGACGa -3'
miRNA:   3'- -GCGGCCgCC-----AuaGGCGGCuGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 93348 0.66 0.926619
Target:  5'- aGCCGGCccg--CCGCCGGcCAGACc- -3'
miRNA:   3'- gCGGCCGccauaGGCGGCU-GUUUGua -5'
15967 3' -56.7 NC_004065.1 + 156899 0.66 0.926619
Target:  5'- gCGUCGG-GGUcccgauccUCCGCCGGCAccGACGa -3'
miRNA:   3'- -GCGGCCgCCAu-------AGGCGGCUGU--UUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.