Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15967 | 3' | -56.7 | NC_004065.1 | + | 164178 | 0.66 | 0.92867 |
Target: 5'- aGCCGcaugucgucgugcgcGCGGaucUCCGCCGGCAucGCGUu -3' miRNA: 3'- gCGGC---------------CGCCau-AGGCGGCUGUu-UGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 78355 | 0.66 | 0.941129 |
Target: 5'- gCGCUGGCGGUAgagcucgCUGUCGuugaGGGCGUu -3' miRNA: 3'- -GCGGCCGCCAUa------GGCGGCug--UUUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 141653 | 0.66 | 0.936516 |
Target: 5'- gCGgUGGCGGUG-CCGCgGccGCGGACGa -3' miRNA: 3'- -GCgGCCGCCAUaGGCGgC--UGUUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 156899 | 0.66 | 0.926619 |
Target: 5'- gCGUCGG-GGUcccgauccUCCGCCGGCAccGACGa -3' miRNA: 3'- -GCGGCCgCCAu-------AGGCGGCUGU--UUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 52883 | 0.66 | 0.945518 |
Target: 5'- aCGCCcGCGGUAagccUCCGauGACAcACAa -3' miRNA: 3'- -GCGGcCGCCAU----AGGCggCUGUuUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 77201 | 0.66 | 0.945518 |
Target: 5'- uGCgCGGCGGcgccCCGCaCGGCGAugGc -3' miRNA: 3'- gCG-GCCGCCaua-GGCG-GCUGUUugUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 139915 | 0.66 | 0.936516 |
Target: 5'- gGCCGGCGGcgccagcggguUGaacuucgucUCCGUCGACAGGa-- -3' miRNA: 3'- gCGGCCGCC-----------AU---------AGGCGGCUGUUUgua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 48118 | 0.66 | 0.947213 |
Target: 5'- gCGgCGGCGGUGggaccucgcgcacgUUGCCGACGuGCGg -3' miRNA: 3'- -GCgGCCGCCAUa-------------GGCGGCUGUuUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 122500 | 0.66 | 0.945518 |
Target: 5'- aGCUgGGCGGUcgCCGCgCGcaccuccucguGCGAGCGg -3' miRNA: 3'- gCGG-CCGCCAuaGGCG-GC-----------UGUUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 64914 | 0.66 | 0.945518 |
Target: 5'- uCGCCgGGCGGgacgCCGCCucagaGACGAcgGCGc -3' miRNA: 3'- -GCGG-CCGCCaua-GGCGG-----CUGUU--UGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 100402 | 0.66 | 0.936516 |
Target: 5'- aGCCGGCGG-GUCCaguucuccgcGCUGACcgcGCAg -3' miRNA: 3'- gCGGCCGCCaUAGG----------CGGCUGuu-UGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 101856 | 0.66 | 0.926619 |
Target: 5'- gCGUCGGgGGcgcuaUcgCCGCCG-CAGACGa -3' miRNA: 3'- -GCGGCCgCC-----AuaGGCGGCuGUUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 52665 | 0.66 | 0.926619 |
Target: 5'- cCGCUGGCGGUGg-CGgUGGCGGAUg- -3' miRNA: 3'- -GCGGCCGCCAUagGCgGCUGUUUGua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 99082 | 0.66 | 0.936516 |
Target: 5'- uGCCgauGGgGGUG-CCGUCGACcAACAa -3' miRNA: 3'- gCGG---CCgCCAUaGGCGGCUGuUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 93348 | 0.66 | 0.926619 |
Target: 5'- aGCCGGCccg--CCGCCGGcCAGACc- -3' miRNA: 3'- gCGGCCGccauaGGCGGCU-GUUUGua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 22926 | 0.66 | 0.941129 |
Target: 5'- gGUCGGCGGUuccGUCuCGUCGuCAGAUu- -3' miRNA: 3'- gCGGCCGCCA---UAG-GCGGCuGUUUGua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 201380 | 0.66 | 0.926619 |
Target: 5'- uCGCCGGgGGgugccaCGUCGACGcACAg -3' miRNA: 3'- -GCGGCCgCCauag--GCGGCUGUuUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 164560 | 0.66 | 0.93168 |
Target: 5'- aGCCGGCGGcgg-CGCCGACc----- -3' miRNA: 3'- gCGGCCGCCauagGCGGCUGuuugua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 122235 | 0.66 | 0.935089 |
Target: 5'- gGCCGGCGGgucguuccUGUCgccgcugcugcccgCGCCGACAccgaccuggGGCAUc -3' miRNA: 3'- gCGGCCGCC--------AUAG--------------GCGGCUGU---------UUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 75592 | 0.66 | 0.941129 |
Target: 5'- uCGCCGGCGGggggaggCCGCUGGg------ -3' miRNA: 3'- -GCGGCCGCCaua----GGCGGCUguuugua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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