Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15967 | 3' | -56.7 | NC_004065.1 | + | 78815 | 0.71 | 0.735584 |
Target: 5'- gCGCCGGCGGUA-CCGgUGAUcaggAGGCGg -3' miRNA: 3'- -GCGGCCGCCAUaGGCgGCUG----UUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 33217 | 0.71 | 0.745034 |
Target: 5'- uCGCgGGCgaGGUGUCCGCaGACGAGgGUc -3' miRNA: 3'- -GCGgCCG--CCAUAGGCGgCUGUUUgUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 96560 | 0.71 | 0.716438 |
Target: 5'- uCGCUGGacucGUCCGCCGACGAGCc- -3' miRNA: 3'- -GCGGCCgccaUAGGCGGCUGUUUGua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 69394 | 0.71 | 0.70676 |
Target: 5'- gCGCUGGCGGaacagCUGCCGACGGGg-- -3' miRNA: 3'- -GCGGCCGCCaua--GGCGGCUGUUUgua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 117171 | 0.71 | 0.697021 |
Target: 5'- gCGCCGaCGGgGUCCGCCccuggGGCAGGCGUu -3' miRNA: 3'- -GCGGCcGCCaUAGGCGG-----CUGUUUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 65562 | 0.71 | 0.697021 |
Target: 5'- uCGCCGGCGGgucgcgaguaccUGUaCCGCgacgCGGCGAACAa -3' miRNA: 3'- -GCGGCCGCC------------AUA-GGCG----GCUGUUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 120553 | 0.71 | 0.697021 |
Target: 5'- uGCCGGCGGcgGUCgGCgCGAgCGGGCGg -3' miRNA: 3'- gCGGCCGCCa-UAGgCG-GCU-GUUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 141624 | 0.71 | 0.726049 |
Target: 5'- uGCCGGCGGUGgcggCuCGgCGACGGAgGg -3' miRNA: 3'- gCGGCCGCCAUa---G-GCgGCUGUUUgUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 113935 | 0.71 | 0.726049 |
Target: 5'- uCGCCGGauGagcUCgGCCGACGAGCAg -3' miRNA: 3'- -GCGGCCgcCau-AGgCGGCUGUUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 119611 | 0.71 | 0.722214 |
Target: 5'- aCGCCGGCGGcggaggagacgCCGUCGGCcguGGCGUg -3' miRNA: 3'- -GCGGCCGCCaua--------GGCGGCUGu--UUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 111704 | 0.71 | 0.697021 |
Target: 5'- aCGUCGGCGGUc-CCGCUGGC-GACGa -3' miRNA: 3'- -GCGGCCGCCAuaGGCGGCUGuUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 65227 | 0.71 | 0.745034 |
Target: 5'- uGCCGGCGGUGgcgcCCGUcuCGACAAu--- -3' miRNA: 3'- gCGGCCGCCAUa---GGCG--GCUGUUugua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 207435 | 0.7 | 0.781821 |
Target: 5'- uCGCCaGGCGG--UCUGCCGA-AGACAUa -3' miRNA: 3'- -GCGG-CCGCCauAGGCGGCUgUUUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 150717 | 0.7 | 0.797746 |
Target: 5'- cCGCCGGUGGgaggcccaggCCGUCGACAGc--- -3' miRNA: 3'- -GCGGCCGCCaua-------GGCGGCUGUUugua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 66773 | 0.7 | 0.799489 |
Target: 5'- gCGCCGGCGccgccgcUgCGCCGACgAAACAUg -3' miRNA: 3'- -GCGGCCGCcau----AgGCGGCUG-UUUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 63874 | 0.7 | 0.754392 |
Target: 5'- aCGUCGGCGccgcugCCGCCGGCGccGACGUc -3' miRNA: 3'- -GCGGCCGCcaua--GGCGGCUGU--UUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 31555 | 0.7 | 0.754392 |
Target: 5'- uGCUGGUGGUGUUCuCCGACccGAACGc -3' miRNA: 3'- gCGGCCGCCAUAGGcGGCUG--UUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 102890 | 0.7 | 0.763647 |
Target: 5'- cCGCCGcCGGUAgcgCCGCCGccGCGAugGg -3' miRNA: 3'- -GCGGCcGCCAUa--GGCGGC--UGUUugUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 49670 | 0.7 | 0.754392 |
Target: 5'- cCG-UGGCGGUG-CCGCCGgaGCAGGCGUc -3' miRNA: 3'- -GCgGCCGCCAUaGGCGGC--UGUUUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 138155 | 0.7 | 0.781821 |
Target: 5'- gGCCGGCGGUGUUuaCGCUgguGGCGAGgAUc -3' miRNA: 3'- gCGGCCGCCAUAG--GCGG---CUGUUUgUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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