miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 49670 0.7 0.754392
Target:  5'- cCG-UGGCGGUG-CCGCCGgaGCAGGCGUc -3'
miRNA:   3'- -GCgGCCGCCAUaGGCGGC--UGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 66773 0.7 0.799489
Target:  5'- gCGCCGGCGccgccgcUgCGCCGACgAAACAUg -3'
miRNA:   3'- -GCGGCCGCcau----AgGCGGCUG-UUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 207435 0.7 0.781821
Target:  5'- uCGCCaGGCGG--UCUGCCGA-AGACAUa -3'
miRNA:   3'- -GCGG-CCGCCauAGGCGGCUgUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 7332 0.69 0.841034
Target:  5'- cCGCCGGCugauGUAUCUGCCaACAAuucuACGUa -3'
miRNA:   3'- -GCGGCCGc---CAUAGGCGGcUGUU----UGUA- -5'
15967 3' -56.7 NC_004065.1 + 146761 0.69 0.841034
Target:  5'- gCGUCGGCGGcGUCUGCCG-CAu---- -3'
miRNA:   3'- -GCGGCCGCCaUAGGCGGCuGUuugua -5'
15967 3' -56.7 NC_004065.1 + 120162 0.69 0.841034
Target:  5'- aCGCCGGUGGca-CCGCcCGGCAccuGCGc -3'
miRNA:   3'- -GCGGCCGCCauaGGCG-GCUGUu--UGUa -5'
15967 3' -56.7 NC_004065.1 + 76377 0.69 0.833054
Target:  5'- gCGCCGGCGccg-CCGCgGAUGAGCu- -3'
miRNA:   3'- -GCGGCCGCcauaGGCGgCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 62615 0.69 0.824903
Target:  5'- cCGCCGGCGGcagcagCCG-CGGCAGcaGCAUu -3'
miRNA:   3'- -GCGGCCGCCaua---GGCgGCUGUU--UGUA- -5'
15967 3' -56.7 NC_004065.1 + 163430 0.69 0.808113
Target:  5'- aCGCC-GCGGUggCCGCCGcCGuGCAg -3'
miRNA:   3'- -GCGGcCGCCAuaGGCGGCuGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 77106 0.69 0.833054
Target:  5'- uGCCgcGGCGGcagcgCCGCCGACAucgucaGACGg -3'
miRNA:   3'- gCGG--CCGCCaua--GGCGGCUGU------UUGUa -5'
15967 3' -56.7 NC_004065.1 + 208191 0.69 0.816587
Target:  5'- aGCC-GCGGUAUCCcCCgGGCGGGCGa -3'
miRNA:   3'- gCGGcCGCCAUAGGcGG-CUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 199252 0.68 0.85645
Target:  5'- uCGUCGGCGuccgcGUCCGCCGACcucggauuccgaGGGCAg -3'
miRNA:   3'- -GCGGCCGCca---UAGGCGGCUG------------UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 22002 0.68 0.863874
Target:  5'- aCGCCGaCGGUcaucgCCGCCGGCAcuAACc- -3'
miRNA:   3'- -GCGGCcGCCAua---GGCGGCUGU--UUGua -5'
15967 3' -56.7 NC_004065.1 + 152919 0.68 0.871102
Target:  5'- uGUCGGCGGcgcugCCGCCGcgGCAAAUc- -3'
miRNA:   3'- gCGGCCGCCaua--GGCGGC--UGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 80649 0.68 0.878129
Target:  5'- gGCCGGCGGUcgcgagcaacauAUCCcuGCCGAUcuuggugauagAAGCGg -3'
miRNA:   3'- gCGGCCGCCA------------UAGG--CGGCUG-----------UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 109148 0.68 0.878129
Target:  5'- uGaCGGCGGU-UCCGUCGACAAc--- -3'
miRNA:   3'- gCgGCCGCCAuAGGCGGCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 229154 0.68 0.884948
Target:  5'- uGCCGGCGGggcgcccUCGCCcGGCAGuCAUg -3'
miRNA:   3'- gCGGCCGCCaua----GGCGG-CUGUUuGUA- -5'
15967 3' -56.7 NC_004065.1 + 48759 0.68 0.884948
Target:  5'- cCGCCGGUGG----CGCCGAaGAGCAUc -3'
miRNA:   3'- -GCGGCCGCCauagGCGGCUgUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 62377 0.68 0.848834
Target:  5'- aGCaCGGUcacGGccGUcCCGCCGACGAGCAUc -3'
miRNA:   3'- gCG-GCCG---CCa-UA-GGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 119465 0.68 0.878129
Target:  5'- aCGCCuGGCGGa--CCGCCGA--AGCGUc -3'
miRNA:   3'- -GCGG-CCGCCauaGGCGGCUguUUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.