miRNA display CGI


Results 1 - 20 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 32554 1.06 0.005841
Target:  5'- gCGCCGGCGGUAUCCGCCGACAAACAUg -3'
miRNA:   3'- -GCGGCCGCCAUAGGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 195118 0.78 0.35587
Target:  5'- uCGCCGGCGGUGUC-GCCGcagcACAGAUAc -3'
miRNA:   3'- -GCGGCCGCCAUAGgCGGC----UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 82336 0.77 0.403802
Target:  5'- aGCCGGUGGUGU-CGCUGACGAucGCGUc -3'
miRNA:   3'- gCGGCCGCCAUAgGCGGCUGUU--UGUA- -5'
15967 3' -56.7 NC_004065.1 + 203511 0.76 0.44673
Target:  5'- uGCCGGCGGgGUCCGUCGcguGACAUg -3'
miRNA:   3'- gCGGCCGCCaUAGGCGGCuguUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 27282 0.75 0.492082
Target:  5'- aGaCCGGCGGcg-CCGCCGACGAcGCGUc -3'
miRNA:   3'- gC-GGCCGCCauaGGCGGCUGUU-UGUA- -5'
15967 3' -56.7 NC_004065.1 + 65836 0.75 0.510813
Target:  5'- uGCCGGCGGagAUCCGCgCGcACGacGACAUg -3'
miRNA:   3'- gCGGCCGCCa-UAGGCG-GC-UGU--UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 203152 0.74 0.543302
Target:  5'- gGCCGGCGGUGgaagauugcuuuuccUCCGCCGAUu----- -3'
miRNA:   3'- gCGGCCGCCAU---------------AGGCGGCUGuuugua -5'
15967 3' -56.7 NC_004065.1 + 118225 0.74 0.558829
Target:  5'- aGaCCGGCGGUcaucggagCCGUCGACGGACGc -3'
miRNA:   3'- gC-GGCCGCCAua------GGCGGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 197475 0.73 0.608027
Target:  5'- uGUCGGCGG-AUaCCGCCGGCGcGACGg -3'
miRNA:   3'- gCGGCCGCCaUA-GGCGGCUGU-UUGUa -5'
15967 3' -56.7 NC_004065.1 + 101428 0.73 0.627869
Target:  5'- gGUCGGagaagaGGUcgCCGCCGGCGGACc- -3'
miRNA:   3'- gCGGCCg-----CCAuaGGCGGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 32888 0.73 0.627869
Target:  5'- gCGCCGGCGaGcGUCUGCCGcUggGCAUc -3'
miRNA:   3'- -GCGGCCGC-CaUAGGCGGCuGuuUGUA- -5'
15967 3' -56.7 NC_004065.1 + 118325 0.73 0.637799
Target:  5'- uCGCCaGCGGga-CCGCCGACGucCAUg -3'
miRNA:   3'- -GCGGcCGCCauaGGCGGCUGUuuGUA- -5'
15967 3' -56.7 NC_004065.1 + 172696 0.73 0.637799
Target:  5'- aGCC-GCGGUcgUCGCCGGCAAuCGUa -3'
miRNA:   3'- gCGGcCGCCAuaGGCGGCUGUUuGUA- -5'
15967 3' -56.7 NC_004065.1 + 132020 0.72 0.647724
Target:  5'- gCGCCGGCGGUGgugaCC-CaCGACGAACu- -3'
miRNA:   3'- -GCGGCCGCCAUa---GGcG-GCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 121778 0.72 0.657638
Target:  5'- gGUCGGaCGGaAagCGCCGACGAGCGUa -3'
miRNA:   3'- gCGGCC-GCCaUagGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 166151 0.72 0.657638
Target:  5'- gCGCCGGCGGcagcggCGCCGACGucguGCAc -3'
miRNA:   3'- -GCGGCCGCCauag--GCGGCUGUu---UGUa -5'
15967 3' -56.7 NC_004065.1 + 109911 0.72 0.657638
Target:  5'- gCGCCGGCGaGUcAagCGCCGuACGGACAUu -3'
miRNA:   3'- -GCGGCCGC-CA-UagGCGGC-UGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 99664 0.72 0.667532
Target:  5'- aGCCGGCGGcgcggCGCCGACAG-CGUc -3'
miRNA:   3'- gCGGCCGCCauag-GCGGCUGUUuGUA- -5'
15967 3' -56.7 NC_004065.1 + 96638 0.72 0.684286
Target:  5'- uCGCCGGCGGUcgCgagcucuuucucggCGUCGGCGGGCu- -3'
miRNA:   3'- -GCGGCCGCCAuaG--------------GCGGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 99225 0.72 0.687232
Target:  5'- gCGCCGGCcaGGcgAUCCGCCucGCGAACGc -3'
miRNA:   3'- -GCGGCCG--CCa-UAGGCGGc-UGUUUGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.