miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 111704 0.71 0.697021
Target:  5'- aCGUCGGCGGUc-CCGCUGGC-GACGa -3'
miRNA:   3'- -GCGGCCGCCAuaGGCGGCUGuUUGUa -5'
15967 3' -56.7 NC_004065.1 + 117171 0.71 0.697021
Target:  5'- gCGCCGaCGGgGUCCGCCccuggGGCAGGCGUu -3'
miRNA:   3'- -GCGGCcGCCaUAGGCGG-----CUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 65562 0.71 0.697021
Target:  5'- uCGCCGGCGGgucgcgaguaccUGUaCCGCgacgCGGCGAACAa -3'
miRNA:   3'- -GCGGCCGCC------------AUA-GGCG----GCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 120553 0.71 0.697021
Target:  5'- uGCCGGCGGcgGUCgGCgCGAgCGGGCGg -3'
miRNA:   3'- gCGGCCGCCa-UAGgCG-GCU-GUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 69394 0.71 0.70676
Target:  5'- gCGCUGGCGGaacagCUGCCGACGGGg-- -3'
miRNA:   3'- -GCGGCCGCCaua--GGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 96560 0.71 0.716438
Target:  5'- uCGCUGGacucGUCCGCCGACGAGCc- -3'
miRNA:   3'- -GCGGCCgccaUAGGCGGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 119611 0.71 0.722214
Target:  5'- aCGCCGGCGGcggaggagacgCCGUCGGCcguGGCGUg -3'
miRNA:   3'- -GCGGCCGCCaua--------GGCGGCUGu--UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 141624 0.71 0.726049
Target:  5'- uGCCGGCGGUGgcggCuCGgCGACGGAgGg -3'
miRNA:   3'- gCGGCCGCCAUa---G-GCgGCUGUUUgUa -5'
15967 3' -56.7 NC_004065.1 + 113935 0.71 0.726049
Target:  5'- uCGCCGGauGagcUCgGCCGACGAGCAg -3'
miRNA:   3'- -GCGGCCgcCau-AGgCGGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 78815 0.71 0.735584
Target:  5'- gCGCCGGCGGUA-CCGgUGAUcaggAGGCGg -3'
miRNA:   3'- -GCGGCCGCCAUaGGCgGCUG----UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 65227 0.71 0.745034
Target:  5'- uGCCGGCGGUGgcgcCCGUcuCGACAAu--- -3'
miRNA:   3'- gCGGCCGCCAUa---GGCG--GCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 33217 0.71 0.745034
Target:  5'- uCGCgGGCgaGGUGUCCGCaGACGAGgGUc -3'
miRNA:   3'- -GCGgCCG--CCAUAGGCGgCUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 31555 0.7 0.754392
Target:  5'- uGCUGGUGGUGUUCuCCGACccGAACGc -3'
miRNA:   3'- gCGGCCGCCAUAGGcGGCUG--UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 49670 0.7 0.754392
Target:  5'- cCG-UGGCGGUG-CCGCCGgaGCAGGCGUc -3'
miRNA:   3'- -GCgGCCGCCAUaGGCGGC--UGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 63874 0.7 0.754392
Target:  5'- aCGUCGGCGccgcugCCGCCGGCGccGACGUc -3'
miRNA:   3'- -GCGGCCGCcaua--GGCGGCUGU--UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 102890 0.7 0.763647
Target:  5'- cCGCCGcCGGUAgcgCCGCCGccGCGAugGg -3'
miRNA:   3'- -GCGGCcGCCAUa--GGCGGC--UGUUugUa -5'
15967 3' -56.7 NC_004065.1 + 207435 0.7 0.781821
Target:  5'- uCGCCaGGCGG--UCUGCCGA-AGACAUa -3'
miRNA:   3'- -GCGG-CCGCCauAGGCGGCUgUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 138155 0.7 0.781821
Target:  5'- gGCCGGCGGUGUUuaCGCUgguGGCGAGgAUc -3'
miRNA:   3'- gCGGCCGCCAUAG--GCGG---CUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 30774 0.7 0.790722
Target:  5'- gGUCGGCGGacgcggaCGCCGACGAugAc -3'
miRNA:   3'- gCGGCCGCCauag---GCGGCUGUUugUa -5'
15967 3' -56.7 NC_004065.1 + 87607 0.7 0.790722
Target:  5'- aGCCGGCG-----CGCCGGCAGGCGa -3'
miRNA:   3'- gCGGCCGCcauagGCGGCUGUUUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.