miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 150717 0.7 0.797746
Target:  5'- cCGCCGGUGGgaggcccaggCCGUCGACAGc--- -3'
miRNA:   3'- -GCGGCCGCCaua-------GGCGGCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 177490 0.7 0.799489
Target:  5'- gCGCaCGGCGGgg-CCGCCGGgGGuCAg -3'
miRNA:   3'- -GCG-GCCGCCauaGGCGGCUgUUuGUa -5'
15967 3' -56.7 NC_004065.1 + 66773 0.7 0.799489
Target:  5'- gCGCCGGCGccgccgcUgCGCCGACgAAACAUg -3'
miRNA:   3'- -GCGGCCGCcau----AgGCGGCUG-UUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 163430 0.69 0.808113
Target:  5'- aCGCC-GCGGUggCCGCCGcCGuGCAg -3'
miRNA:   3'- -GCGGcCGCCAuaGGCGGCuGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 208191 0.69 0.816587
Target:  5'- aGCC-GCGGUAUCCcCCgGGCGGGCGa -3'
miRNA:   3'- gCGGcCGCCAUAGGcGG-CUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 62615 0.69 0.824903
Target:  5'- cCGCCGGCGGcagcagCCG-CGGCAGcaGCAUu -3'
miRNA:   3'- -GCGGCCGCCaua---GGCgGCUGUU--UGUA- -5'
15967 3' -56.7 NC_004065.1 + 76377 0.69 0.833054
Target:  5'- gCGCCGGCGccg-CCGCgGAUGAGCu- -3'
miRNA:   3'- -GCGGCCGCcauaGGCGgCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 77106 0.69 0.833054
Target:  5'- uGCCgcGGCGGcagcgCCGCCGACAucgucaGACGg -3'
miRNA:   3'- gCGG--CCGCCaua--GGCGGCUGU------UUGUa -5'
15967 3' -56.7 NC_004065.1 + 120162 0.69 0.841034
Target:  5'- aCGCCGGUGGca-CCGCcCGGCAccuGCGc -3'
miRNA:   3'- -GCGGCCGCCauaGGCG-GCUGUu--UGUa -5'
15967 3' -56.7 NC_004065.1 + 7332 0.69 0.841034
Target:  5'- cCGCCGGCugauGUAUCUGCCaACAAuucuACGUa -3'
miRNA:   3'- -GCGGCCGc---CAUAGGCGGcUGUU----UGUA- -5'
15967 3' -56.7 NC_004065.1 + 146761 0.69 0.841034
Target:  5'- gCGUCGGCGGcGUCUGCCG-CAu---- -3'
miRNA:   3'- -GCGGCCGCCaUAGGCGGCuGUuugua -5'
15967 3' -56.7 NC_004065.1 + 115080 0.68 0.848834
Target:  5'- gGCCGGCGGcg-CCGaCUGAUGAugAUc -3'
miRNA:   3'- gCGGCCGCCauaGGC-GGCUGUUugUA- -5'
15967 3' -56.7 NC_004065.1 + 62377 0.68 0.848834
Target:  5'- aGCaCGGUcacGGccGUcCCGCCGACGAGCAUc -3'
miRNA:   3'- gCG-GCCG---CCa-UA-GGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 199252 0.68 0.85645
Target:  5'- uCGUCGGCGuccgcGUCCGCCGACcucggauuccgaGGGCAg -3'
miRNA:   3'- -GCGGCCGCca---UAGGCGGCUG------------UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 86316 0.68 0.85645
Target:  5'- uCGCCGGCgccgaccuGGUcUUCGUCGuCAGACGUa -3'
miRNA:   3'- -GCGGCCG--------CCAuAGGCGGCuGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 152824 0.68 0.863874
Target:  5'- uCGCCGuGCGGggcgCCGCCGcGCAcuuguGGCAc -3'
miRNA:   3'- -GCGGC-CGCCaua-GGCGGC-UGU-----UUGUa -5'
15967 3' -56.7 NC_004065.1 + 27690 0.68 0.863874
Target:  5'- gGCCGGaGGcucugAUCCGCCcGGCGGACc- -3'
miRNA:   3'- gCGGCCgCCa----UAGGCGG-CUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 22002 0.68 0.863874
Target:  5'- aCGCCGaCGGUcaucgCCGCCGGCAcuAACc- -3'
miRNA:   3'- -GCGGCcGCCAua---GGCGGCUGU--UUGua -5'
15967 3' -56.7 NC_004065.1 + 7590 0.68 0.863874
Target:  5'- gGuCCGGCGGUAaccugcuaUCCuuGCCGACGAuCGa -3'
miRNA:   3'- gC-GGCCGCCAU--------AGG--CGGCUGUUuGUa -5'
15967 3' -56.7 NC_004065.1 + 65471 0.68 0.863874
Target:  5'- gGUCGGCGccg-CCGCCGGCucGACAc -3'
miRNA:   3'- gCGGCCGCcauaGGCGGCUGu-UUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.