miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 101856 0.66 0.926619
Target:  5'- gCGUCGGgGGcgcuaUcgCCGCCG-CAGACGa -3'
miRNA:   3'- -GCGGCCgCC-----AuaGGCGGCuGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 201380 0.66 0.926619
Target:  5'- uCGCCGGgGGgugccaCGUCGACGcACAg -3'
miRNA:   3'- -GCGGCCgCCauag--GCGGCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 52665 0.66 0.926619
Target:  5'- cCGCUGGCGGUGg-CGgUGGCGGAUg- -3'
miRNA:   3'- -GCGGCCGCCAUagGCgGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 68585 0.67 0.921332
Target:  5'- gCGgCGGCGGcgAUCCagagcGCCGACAcgucgcaccugGACAg -3'
miRNA:   3'- -GCgGCCGCCa-UAGG-----CGGCUGU-----------UUGUa -5'
15967 3' -56.7 NC_004065.1 + 124648 0.67 0.921332
Target:  5'- uCGCCGGCcGUcagcgaguccggGUCCGCCGuCAGGa-- -3'
miRNA:   3'- -GCGGCCGcCA------------UAGGCGGCuGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 104909 0.67 0.921332
Target:  5'- gGCgCGGUGGUG-CCGgCGGCGuACAc -3'
miRNA:   3'- gCG-GCCGCCAUaGGCgGCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 159270 0.67 0.921332
Target:  5'- gGCagGGUGGUggCCGCCGAgCGGAUg- -3'
miRNA:   3'- gCGg-CCGCCAuaGGCGGCU-GUUUGua -5'
15967 3' -56.7 NC_004065.1 + 124735 0.67 0.921332
Target:  5'- gCGCCGcacgcGUGGUGUUCaGCaCGGCGGGCAc -3'
miRNA:   3'- -GCGGC-----CGCCAUAGG-CG-GCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 196547 0.67 0.915822
Target:  5'- uGCCGGCGcGUAggcgCCcacgGCCG-CGAACGc -3'
miRNA:   3'- gCGGCCGC-CAUa---GG----CGGCuGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 24774 0.67 0.915258
Target:  5'- gGCCGGCgcgGGUAUCUcgcgccagcgcauGCCGAUgcaGAGCGa -3'
miRNA:   3'- gCGGCCG---CCAUAGG-------------CGGCUG---UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 111775 0.67 0.910087
Target:  5'- gCGCCGGCGaGcuccacgcGUCCGUCGACGGc--- -3'
miRNA:   3'- -GCGGCCGC-Ca-------UAGGCGGCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 35596 0.67 0.910087
Target:  5'- gCGUCGGCGGUGUCgGUgcgggauccaCGGCGgcGGCGg -3'
miRNA:   3'- -GCGGCCGCCAUAGgCG----------GCUGU--UUGUa -5'
15967 3' -56.7 NC_004065.1 + 132522 0.67 0.90413
Target:  5'- uCGUCGG-GGUgAUCCGCCG-CAGAUc- -3'
miRNA:   3'- -GCGGCCgCCA-UAGGCGGCuGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 111602 0.67 0.90413
Target:  5'- aCGCC-GCcGUGUUCGCCGGCGAGa-- -3'
miRNA:   3'- -GCGGcCGcCAUAGGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 41382 0.67 0.90413
Target:  5'- cCGCUGGUcguGGUGUgguacgugcucgCCGCCGGCGAcACGg -3'
miRNA:   3'- -GCGGCCG---CCAUA------------GGCGGCUGUU-UGUa -5'
15967 3' -56.7 NC_004065.1 + 176103 0.67 0.90413
Target:  5'- cCGCCGcaaGCGGUAUCC--UGACGGGCGc -3'
miRNA:   3'- -GCGGC---CGCCAUAGGcgGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 77411 0.67 0.897952
Target:  5'- gCGCacauGGCGGUGacccgggcgCUGCUGACGGACGa -3'
miRNA:   3'- -GCGg---CCGCCAUa--------GGCGGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 17959 0.67 0.897952
Target:  5'- uCGCCGGaCGGUcguccGUCUGCCGcGCGAc--- -3'
miRNA:   3'- -GCGGCC-GCCA-----UAGGCGGC-UGUUugua -5'
15967 3' -56.7 NC_004065.1 + 208023 0.67 0.890906
Target:  5'- uGCCGGCGGcgAUgaCCGUCGGCGuggccguGGCGg -3'
miRNA:   3'- gCGGCCGCCa-UA--GGCGGCUGU-------UUGUa -5'
15967 3' -56.7 NC_004065.1 + 153286 0.68 0.884948
Target:  5'- cCGCCGGCGccgcgcccGUccCCGCCGAgGAguGCAa -3'
miRNA:   3'- -GCGGCCGC--------CAuaGGCGGCUgUU--UGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.