miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 101228 0.68 0.884948
Target:  5'- aCGUCGGUcugaacgccagaGGUG-CCGCCGGCGAcgGCGc -3'
miRNA:   3'- -GCGGCCG------------CCAUaGGCGGCUGUU--UGUa -5'
15967 3' -56.7 NC_004065.1 + 229154 0.68 0.884948
Target:  5'- uGCCGGCGGggcgcccUCGCCcGGCAGuCAUg -3'
miRNA:   3'- gCGGCCGCCaua----GGCGG-CUGUUuGUA- -5'
15967 3' -56.7 NC_004065.1 + 48759 0.68 0.884948
Target:  5'- cCGCCGGUGG----CGCCGAaGAGCAUc -3'
miRNA:   3'- -GCGGCCGCCauagGCGGCUgUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 210590 0.68 0.878129
Target:  5'- uCGCCagcagcGCGGUGccuccggcaccUCCGCCGACGccGGCGg -3'
miRNA:   3'- -GCGGc-----CGCCAU-----------AGGCGGCUGU--UUGUa -5'
15967 3' -56.7 NC_004065.1 + 119465 0.68 0.878129
Target:  5'- aCGCCuGGCGGa--CCGCCGA--AGCGUc -3'
miRNA:   3'- -GCGG-CCGCCauaGGCGGCUguUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 109148 0.68 0.878129
Target:  5'- uGaCGGCGGU-UCCGUCGACAAc--- -3'
miRNA:   3'- gCgGCCGCCAuAGGCGGCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 80649 0.68 0.878129
Target:  5'- gGCCGGCGGUcgcgagcaacauAUCCcuGCCGAUcuuggugauagAAGCGg -3'
miRNA:   3'- gCGGCCGCCA------------UAGG--CGGCUG-----------UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 210843 0.68 0.871102
Target:  5'- gGCCGGaGGUGUcCCGCCucGGCAGAa-- -3'
miRNA:   3'- gCGGCCgCCAUA-GGCGG--CUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 127613 0.68 0.871102
Target:  5'- gCGCCGGCuccucccGUCCGUCGACGAGg-- -3'
miRNA:   3'- -GCGGCCGcca----UAGGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 152919 0.68 0.871102
Target:  5'- uGUCGGCGGcgcugCCGCCGcgGCAAAUc- -3'
miRNA:   3'- gCGGCCGCCaua--GGCGGC--UGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 27690 0.68 0.863874
Target:  5'- gGCCGGaGGcucugAUCCGCCcGGCGGACc- -3'
miRNA:   3'- gCGGCCgCCa----UAGGCGG-CUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 152824 0.68 0.863874
Target:  5'- uCGCCGuGCGGggcgCCGCCGcGCAcuuguGGCAc -3'
miRNA:   3'- -GCGGC-CGCCaua-GGCGGC-UGU-----UUGUa -5'
15967 3' -56.7 NC_004065.1 + 7590 0.68 0.863874
Target:  5'- gGuCCGGCGGUAaccugcuaUCCuuGCCGACGAuCGa -3'
miRNA:   3'- gC-GGCCGCCAU--------AGG--CGGCUGUUuGUa -5'
15967 3' -56.7 NC_004065.1 + 65471 0.68 0.863874
Target:  5'- gGUCGGCGccg-CCGCCGGCucGACAc -3'
miRNA:   3'- gCGGCCGCcauaGGCGGCUGu-UUGUa -5'
15967 3' -56.7 NC_004065.1 + 174630 0.68 0.863874
Target:  5'- gGCCGGUcuucUGUCCGCuCGGCAGAgGUg -3'
miRNA:   3'- gCGGCCGcc--AUAGGCG-GCUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 22002 0.68 0.863874
Target:  5'- aCGCCGaCGGUcaucgCCGCCGGCAcuAACc- -3'
miRNA:   3'- -GCGGCcGCCAua---GGCGGCUGU--UUGua -5'
15967 3' -56.7 NC_004065.1 + 86316 0.68 0.85645
Target:  5'- uCGCCGGCgccgaccuGGUcUUCGUCGuCAGACGUa -3'
miRNA:   3'- -GCGGCCG--------CCAuAGGCGGCuGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 199252 0.68 0.85645
Target:  5'- uCGUCGGCGuccgcGUCCGCCGACcucggauuccgaGGGCAg -3'
miRNA:   3'- -GCGGCCGCca---UAGGCGGCUG------------UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 62377 0.68 0.848834
Target:  5'- aGCaCGGUcacGGccGUcCCGCCGACGAGCAUc -3'
miRNA:   3'- gCG-GCCG---CCa-UA-GGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 115080 0.68 0.848834
Target:  5'- gGCCGGCGGcg-CCGaCUGAUGAugAUc -3'
miRNA:   3'- gCGGCCGCCauaGGC-GGCUGUUugUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.