Results 81 - 100 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15967 | 3' | -56.7 | NC_004065.1 | + | 65227 | 0.71 | 0.745034 |
Target: 5'- uGCCGGCGGUGgcgcCCGUcuCGACAAu--- -3' miRNA: 3'- gCGGCCGCCAUa---GGCG--GCUGUUugua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 78815 | 0.71 | 0.735584 |
Target: 5'- gCGCCGGCGGUA-CCGgUGAUcaggAGGCGg -3' miRNA: 3'- -GCGGCCGCCAUaGGCgGCUG----UUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 113935 | 0.71 | 0.726049 |
Target: 5'- uCGCCGGauGagcUCgGCCGACGAGCAg -3' miRNA: 3'- -GCGGCCgcCau-AGgCGGCUGUUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 141624 | 0.71 | 0.726049 |
Target: 5'- uGCCGGCGGUGgcggCuCGgCGACGGAgGg -3' miRNA: 3'- gCGGCCGCCAUa---G-GCgGCUGUUUgUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 119611 | 0.71 | 0.722214 |
Target: 5'- aCGCCGGCGGcggaggagacgCCGUCGGCcguGGCGUg -3' miRNA: 3'- -GCGGCCGCCaua--------GGCGGCUGu--UUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 96560 | 0.71 | 0.716438 |
Target: 5'- uCGCUGGacucGUCCGCCGACGAGCc- -3' miRNA: 3'- -GCGGCCgccaUAGGCGGCUGUUUGua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 69394 | 0.71 | 0.70676 |
Target: 5'- gCGCUGGCGGaacagCUGCCGACGGGg-- -3' miRNA: 3'- -GCGGCCGCCaua--GGCGGCUGUUUgua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 120553 | 0.71 | 0.697021 |
Target: 5'- uGCCGGCGGcgGUCgGCgCGAgCGGGCGg -3' miRNA: 3'- gCGGCCGCCa-UAGgCG-GCU-GUUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 111704 | 0.71 | 0.697021 |
Target: 5'- aCGUCGGCGGUc-CCGCUGGC-GACGa -3' miRNA: 3'- -GCGGCCGCCAuaGGCGGCUGuUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 65562 | 0.71 | 0.697021 |
Target: 5'- uCGCCGGCGGgucgcgaguaccUGUaCCGCgacgCGGCGAACAa -3' miRNA: 3'- -GCGGCCGCC------------AUA-GGCG----GCUGUUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 117171 | 0.71 | 0.697021 |
Target: 5'- gCGCCGaCGGgGUCCGCCccuggGGCAGGCGUu -3' miRNA: 3'- -GCGGCcGCCaUAGGCGG-----CUGUUUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 99225 | 0.72 | 0.687232 |
Target: 5'- gCGCCGGCcaGGcgAUCCGCCucGCGAACGc -3' miRNA: 3'- -GCGGCCG--CCa-UAGGCGGc-UGUUUGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 96638 | 0.72 | 0.684286 |
Target: 5'- uCGCCGGCGGUcgCgagcucuuucucggCGUCGGCGGGCu- -3' miRNA: 3'- -GCGGCCGCCAuaG--------------GCGGCUGUUUGua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 99664 | 0.72 | 0.667532 |
Target: 5'- aGCCGGCGGcgcggCGCCGACAG-CGUc -3' miRNA: 3'- gCGGCCGCCauag-GCGGCUGUUuGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 109911 | 0.72 | 0.657638 |
Target: 5'- gCGCCGGCGaGUcAagCGCCGuACGGACAUu -3' miRNA: 3'- -GCGGCCGC-CA-UagGCGGC-UGUUUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 121778 | 0.72 | 0.657638 |
Target: 5'- gGUCGGaCGGaAagCGCCGACGAGCGUa -3' miRNA: 3'- gCGGCC-GCCaUagGCGGCUGUUUGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 166151 | 0.72 | 0.657638 |
Target: 5'- gCGCCGGCGGcagcggCGCCGACGucguGCAc -3' miRNA: 3'- -GCGGCCGCCauag--GCGGCUGUu---UGUa -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 132020 | 0.72 | 0.647724 |
Target: 5'- gCGCCGGCGGUGgugaCC-CaCGACGAACu- -3' miRNA: 3'- -GCGGCCGCCAUa---GGcG-GCUGUUUGua -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 118325 | 0.73 | 0.637799 |
Target: 5'- uCGCCaGCGGga-CCGCCGACGucCAUg -3' miRNA: 3'- -GCGGcCGCCauaGGCGGCUGUuuGUA- -5' |
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15967 | 3' | -56.7 | NC_004065.1 | + | 172696 | 0.73 | 0.637799 |
Target: 5'- aGCC-GCGGUcgUCGCCGGCAAuCGUa -3' miRNA: 3'- gCGGcCGCCAuaGGCGGCUGUUuGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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