miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 871 0.66 0.941129
Target:  5'- uGCCGGgcgaGGgcgccCCGCCGGCAugcuACAg -3'
miRNA:   3'- gCGGCCg---CCaua--GGCGGCUGUu---UGUa -5'
15967 3' -56.7 NC_004065.1 + 7332 0.69 0.841034
Target:  5'- cCGCCGGCugauGUAUCUGCCaACAAuucuACGUa -3'
miRNA:   3'- -GCGGCCGc---CAUAGGCGGcUGUU----UGUA- -5'
15967 3' -56.7 NC_004065.1 + 7590 0.68 0.863874
Target:  5'- gGuCCGGCGGUAaccugcuaUCCuuGCCGACGAuCGa -3'
miRNA:   3'- gC-GGCCGCCAU--------AGG--CGGCUGUUuGUa -5'
15967 3' -56.7 NC_004065.1 + 17959 0.67 0.897952
Target:  5'- uCGCCGGaCGGUcguccGUCUGCCGcGCGAc--- -3'
miRNA:   3'- -GCGGCC-GCCA-----UAGGCGGC-UGUUugua -5'
15967 3' -56.7 NC_004065.1 + 22002 0.68 0.863874
Target:  5'- aCGCCGaCGGUcaucgCCGCCGGCAcuAACc- -3'
miRNA:   3'- -GCGGCcGCCAua---GGCGGCUGU--UUGua -5'
15967 3' -56.7 NC_004065.1 + 22926 0.66 0.941129
Target:  5'- gGUCGGCGGUuccGUCuCGUCGuCAGAUu- -3'
miRNA:   3'- gCGGCCGCCA---UAG-GCGGCuGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 24774 0.67 0.915258
Target:  5'- gGCCGGCgcgGGUAUCUcgcgccagcgcauGCCGAUgcaGAGCGa -3'
miRNA:   3'- gCGGCCG---CCAUAGG-------------CGGCUG---UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 27282 0.75 0.492082
Target:  5'- aGaCCGGCGGcg-CCGCCGACGAcGCGUc -3'
miRNA:   3'- gC-GGCCGCCauaGGCGGCUGUU-UGUA- -5'
15967 3' -56.7 NC_004065.1 + 27690 0.68 0.863874
Target:  5'- gGCCGGaGGcucugAUCCGCCcGGCGGACc- -3'
miRNA:   3'- gCGGCCgCCa----UAGGCGG-CUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 30774 0.7 0.790722
Target:  5'- gGUCGGCGGacgcggaCGCCGACGAugAc -3'
miRNA:   3'- gCGGCCGCCauag---GCGGCUGUUugUa -5'
15967 3' -56.7 NC_004065.1 + 31555 0.7 0.754392
Target:  5'- uGCUGGUGGUGUUCuCCGACccGAACGc -3'
miRNA:   3'- gCGGCCGCCAUAGGcGGCUG--UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 32554 1.06 0.005841
Target:  5'- gCGCCGGCGGUAUCCGCCGACAAACAUg -3'
miRNA:   3'- -GCGGCCGCCAUAGGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 32888 0.73 0.627869
Target:  5'- gCGCCGGCGaGcGUCUGCCGcUggGCAUc -3'
miRNA:   3'- -GCGGCCGC-CaUAGGCGGCuGuuUGUA- -5'
15967 3' -56.7 NC_004065.1 + 33217 0.71 0.745034
Target:  5'- uCGCgGGCgaGGUGUCCGCaGACGAGgGUc -3'
miRNA:   3'- -GCGgCCG--CCAUAGGCGgCUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 35596 0.67 0.910087
Target:  5'- gCGUCGGCGGUGUCgGUgcgggauccaCGGCGgcGGCGg -3'
miRNA:   3'- -GCGGCCGCCAUAGgCG----------GCUGU--UUGUa -5'
15967 3' -56.7 NC_004065.1 + 41382 0.67 0.90413
Target:  5'- cCGCUGGUcguGGUGUgguacgugcucgCCGCCGGCGAcACGg -3'
miRNA:   3'- -GCGGCCG---CCAUA------------GGCGGCUGUU-UGUa -5'
15967 3' -56.7 NC_004065.1 + 48118 0.66 0.947213
Target:  5'- gCGgCGGCGGUGggaccucgcgcacgUUGCCGACGuGCGg -3'
miRNA:   3'- -GCgGCCGCCAUa-------------GGCGGCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 48759 0.68 0.884948
Target:  5'- cCGCCGGUGG----CGCCGAaGAGCAUc -3'
miRNA:   3'- -GCGGCCGCCauagGCGGCUgUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 49670 0.7 0.754392
Target:  5'- cCG-UGGCGGUG-CCGCCGgaGCAGGCGUc -3'
miRNA:   3'- -GCgGCCGCCAUaGGCGGC--UGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 52665 0.66 0.926619
Target:  5'- cCGCUGGCGGUGg-CGgUGGCGGAUg- -3'
miRNA:   3'- -GCGGCCGCCAUagGCgGCUGUUUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.