miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 52883 0.66 0.945518
Target:  5'- aCGCCcGCGGUAagccUCCGauGACAcACAa -3'
miRNA:   3'- -GCGGcCGCCAU----AGGCggCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 62377 0.68 0.848834
Target:  5'- aGCaCGGUcacGGccGUcCCGCCGACGAGCAUc -3'
miRNA:   3'- gCG-GCCG---CCa-UA-GGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 62615 0.69 0.824903
Target:  5'- cCGCCGGCGGcagcagCCG-CGGCAGcaGCAUu -3'
miRNA:   3'- -GCGGCCGCCaua---GGCgGCUGUU--UGUA- -5'
15967 3' -56.7 NC_004065.1 + 63874 0.7 0.754392
Target:  5'- aCGUCGGCGccgcugCCGCCGGCGccGACGUc -3'
miRNA:   3'- -GCGGCCGCcaua--GGCGGCUGU--UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 64914 0.66 0.945518
Target:  5'- uCGCCgGGCGGgacgCCGCCucagaGACGAcgGCGc -3'
miRNA:   3'- -GCGG-CCGCCaua-GGCGG-----CUGUU--UGUa -5'
15967 3' -56.7 NC_004065.1 + 65227 0.71 0.745034
Target:  5'- uGCCGGCGGUGgcgcCCGUcuCGACAAu--- -3'
miRNA:   3'- gCGGCCGCCAUa---GGCG--GCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 65471 0.68 0.863874
Target:  5'- gGUCGGCGccg-CCGCCGGCucGACAc -3'
miRNA:   3'- gCGGCCGCcauaGGCGGCUGu-UUGUa -5'
15967 3' -56.7 NC_004065.1 + 65562 0.71 0.697021
Target:  5'- uCGCCGGCGGgucgcgaguaccUGUaCCGCgacgCGGCGAACAa -3'
miRNA:   3'- -GCGGCCGCC------------AUA-GGCG----GCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 65836 0.75 0.510813
Target:  5'- uGCCGGCGGagAUCCGCgCGcACGacGACAUg -3'
miRNA:   3'- gCGGCCGCCa-UAGGCG-GC-UGU--UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 66773 0.7 0.799489
Target:  5'- gCGCCGGCGccgccgcUgCGCCGACgAAACAUg -3'
miRNA:   3'- -GCGGCCGCcau----AgGCGGCUG-UUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 68585 0.67 0.921332
Target:  5'- gCGgCGGCGGcgAUCCagagcGCCGACAcgucgcaccugGACAg -3'
miRNA:   3'- -GCgGCCGCCa-UAGG-----CGGCUGU-----------UUGUa -5'
15967 3' -56.7 NC_004065.1 + 69394 0.71 0.70676
Target:  5'- gCGCUGGCGGaacagCUGCCGACGGGg-- -3'
miRNA:   3'- -GCGGCCGCCaua--GGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 73123 0.66 0.926619
Target:  5'- uGCCGGCGGaggAUCgGgaccCCGACGcGCGa -3'
miRNA:   3'- gCGGCCGCCa--UAGgC----GGCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 75592 0.66 0.941129
Target:  5'- uCGCCGGCGGggggaggCCGCUGGg------ -3'
miRNA:   3'- -GCGGCCGCCaua----GGCGGCUguuugua -5'
15967 3' -56.7 NC_004065.1 + 76377 0.69 0.833054
Target:  5'- gCGCCGGCGccg-CCGCgGAUGAGCu- -3'
miRNA:   3'- -GCGGCCGCcauaGGCGgCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 77106 0.69 0.833054
Target:  5'- uGCCgcGGCGGcagcgCCGCCGACAucgucaGACGg -3'
miRNA:   3'- gCGG--CCGCCaua--GGCGGCUGU------UUGUa -5'
15967 3' -56.7 NC_004065.1 + 77201 0.66 0.945518
Target:  5'- uGCgCGGCGGcgccCCGCaCGGCGAugGc -3'
miRNA:   3'- gCG-GCCGCCaua-GGCG-GCUGUUugUa -5'
15967 3' -56.7 NC_004065.1 + 77411 0.67 0.897952
Target:  5'- gCGCacauGGCGGUGacccgggcgCUGCUGACGGACGa -3'
miRNA:   3'- -GCGg---CCGCCAUa--------GGCGGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 78355 0.66 0.941129
Target:  5'- gCGCUGGCGGUAgagcucgCUGUCGuugaGGGCGUu -3'
miRNA:   3'- -GCGGCCGCCAUa------GGCGGCug--UUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 78815 0.71 0.735584
Target:  5'- gCGCCGGCGGUA-CCGgUGAUcaggAGGCGg -3'
miRNA:   3'- -GCGGCCGCCAUaGGCgGCUG----UUUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.