miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 80649 0.68 0.878129
Target:  5'- gGCCGGCGGUcgcgagcaacauAUCCcuGCCGAUcuuggugauagAAGCGg -3'
miRNA:   3'- gCGGCCGCCA------------UAGG--CGGCUG-----------UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 82336 0.77 0.403802
Target:  5'- aGCCGGUGGUGU-CGCUGACGAucGCGUc -3'
miRNA:   3'- gCGGCCGCCAUAgGCGGCUGUU--UGUA- -5'
15967 3' -56.7 NC_004065.1 + 86316 0.68 0.85645
Target:  5'- uCGCCGGCgccgaccuGGUcUUCGUCGuCAGACGUa -3'
miRNA:   3'- -GCGGCCG--------CCAuAGGCGGCuGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 87607 0.7 0.790722
Target:  5'- aGCCGGCG-----CGCCGGCAGGCGa -3'
miRNA:   3'- gCGGCCGCcauagGCGGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 93348 0.66 0.926619
Target:  5'- aGCCGGCccg--CCGCCGGcCAGACc- -3'
miRNA:   3'- gCGGCCGccauaGGCGGCU-GUUUGua -5'
15967 3' -56.7 NC_004065.1 + 96560 0.71 0.716438
Target:  5'- uCGCUGGacucGUCCGCCGACGAGCc- -3'
miRNA:   3'- -GCGGCCgccaUAGGCGGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 96638 0.72 0.684286
Target:  5'- uCGCCGGCGGUcgCgagcucuuucucggCGUCGGCGGGCu- -3'
miRNA:   3'- -GCGGCCGCCAuaG--------------GCGGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 99082 0.66 0.936516
Target:  5'- uGCCgauGGgGGUG-CCGUCGACcAACAa -3'
miRNA:   3'- gCGG---CCgCCAUaGGCGGCUGuUUGUa -5'
15967 3' -56.7 NC_004065.1 + 99225 0.72 0.687232
Target:  5'- gCGCCGGCcaGGcgAUCCGCCucGCGAACGc -3'
miRNA:   3'- -GCGGCCG--CCa-UAGGCGGc-UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 99664 0.72 0.667532
Target:  5'- aGCCGGCGGcgcggCGCCGACAG-CGUc -3'
miRNA:   3'- gCGGCCGCCauag-GCGGCUGUUuGUA- -5'
15967 3' -56.7 NC_004065.1 + 100402 0.66 0.936516
Target:  5'- aGCCGGCGG-GUCCaguucuccgcGCUGACcgcGCAg -3'
miRNA:   3'- gCGGCCGCCaUAGG----------CGGCUGuu-UGUa -5'
15967 3' -56.7 NC_004065.1 + 101228 0.68 0.884948
Target:  5'- aCGUCGGUcugaacgccagaGGUG-CCGCCGGCGAcgGCGc -3'
miRNA:   3'- -GCGGCCG------------CCAUaGGCGGCUGUU--UGUa -5'
15967 3' -56.7 NC_004065.1 + 101428 0.73 0.627869
Target:  5'- gGUCGGagaagaGGUcgCCGCCGGCGGACc- -3'
miRNA:   3'- gCGGCCg-----CCAuaGGCGGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 101856 0.66 0.926619
Target:  5'- gCGUCGGgGGcgcuaUcgCCGCCG-CAGACGa -3'
miRNA:   3'- -GCGGCCgCC-----AuaGGCGGCuGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 102890 0.7 0.763647
Target:  5'- cCGCCGcCGGUAgcgCCGCCGccGCGAugGg -3'
miRNA:   3'- -GCGGCcGCCAUa--GGCGGC--UGUUugUa -5'
15967 3' -56.7 NC_004065.1 + 104909 0.67 0.921332
Target:  5'- gGCgCGGUGGUG-CCGgCGGCGuACAc -3'
miRNA:   3'- gCG-GCCGCCAUaGGCgGCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 109148 0.68 0.878129
Target:  5'- uGaCGGCGGU-UCCGUCGACAAc--- -3'
miRNA:   3'- gCgGCCGCCAuAGGCGGCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 109911 0.72 0.657638
Target:  5'- gCGCCGGCGaGUcAagCGCCGuACGGACAUu -3'
miRNA:   3'- -GCGGCCGC-CA-UagGCGGC-UGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 111602 0.67 0.90413
Target:  5'- aCGCC-GCcGUGUUCGCCGGCGAGa-- -3'
miRNA:   3'- -GCGGcCGcCAUAGGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 111704 0.71 0.697021
Target:  5'- aCGUCGGCGGUc-CCGCUGGC-GACGa -3'
miRNA:   3'- -GCGGCCGCCAuaGGCGGCUGuUUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.